miRNA display CGI


Results 21 - 40 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24238 3' -55.6 NC_005263.2 + 16722 0.69 0.482743
Target:  5'- cCGCGAGCGguggCGcaauUGCCCGGCgucaGUCa -3'
miRNA:   3'- uGUGCUUGUa---GC----ACGGGCCGag--CAGg -5'
24238 3' -55.6 NC_005263.2 + 17317 0.69 0.513745
Target:  5'- cGCGCGAAU-UCG-GCCCGGCg---CCg -3'
miRNA:   3'- -UGUGCUUGuAGCaCGGGCCGagcaGG- -5'
24238 3' -55.6 NC_005263.2 + 18538 0.68 0.577921
Target:  5'- cCGCGAGCGcguucaagaaguUCGcgcaGCCCGGCaccgguggCGUCCc -3'
miRNA:   3'- uGUGCUUGU------------AGCa---CGGGCCGa-------GCAGG- -5'
24238 3' -55.6 NC_005263.2 + 18615 0.66 0.709005
Target:  5'- uGCGCGggU-UCGUGCagCGGCcCGaCCa -3'
miRNA:   3'- -UGUGCuuGuAGCACGg-GCCGaGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 18857 0.69 0.503316
Target:  5'- cGCGUGAACAacgCGUGCCuCGGCgCG-CCg -3'
miRNA:   3'- -UGUGCUUGUa--GCACGG-GCCGaGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 18937 0.69 0.482743
Target:  5'- gGCACGAGCGcUCGagcGCgCCGGUUCGagCg -3'
miRNA:   3'- -UGUGCUUGU-AGCa--CG-GGCCGAGCagG- -5'
24238 3' -55.6 NC_005263.2 + 19148 0.71 0.408637
Target:  5'- uGCGCGu-CGUCGUGaCCgugcauccgccggcgCGGCUCGUCg -3'
miRNA:   3'- -UGUGCuuGUAGCAC-GG---------------GCCGAGCAGg -5'
24238 3' -55.6 NC_005263.2 + 20558 0.72 0.3437
Target:  5'- cCGCGAcGC-UCGUGCCCGGCcUG-CCg -3'
miRNA:   3'- uGUGCU-UGuAGCACGGGCCGaGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 22228 0.66 0.654643
Target:  5'- uCGCcGGCGUCG-GCCCGGUUgCGacgCCg -3'
miRNA:   3'- uGUGcUUGUAGCaCGGGCCGA-GCa--GG- -5'
24238 3' -55.6 NC_005263.2 + 22369 0.66 0.676524
Target:  5'- -gGCGGACAggUCGUGCaCGGCgcgcagCG-CCa -3'
miRNA:   3'- ugUGCUUGU--AGCACGgGCCGa-----GCaGG- -5'
24238 3' -55.6 NC_005263.2 + 22402 0.66 0.698239
Target:  5'- cCGCGAACGUaCGcGCcgCCGuGCUCG-CCg -3'
miRNA:   3'- uGUGCUUGUA-GCaCG--GGC-CGAGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 22765 0.67 0.632678
Target:  5'- aACGCGAugG-CGaccUGCCCgaGGCUCGUg- -3'
miRNA:   3'- -UGUGCUugUaGC---ACGGG--CCGAGCAgg -5'
24238 3' -55.6 NC_005263.2 + 23622 0.68 0.556269
Target:  5'- gGCACcGugGUCGaGCCgGaGCUCGUCg -3'
miRNA:   3'- -UGUGcUugUAGCaCGGgC-CGAGCAGg -5'
24238 3' -55.6 NC_005263.2 + 24376 0.68 0.577921
Target:  5'- gGCGCGAACAUCGUGCa-GGUagGg-- -3'
miRNA:   3'- -UGUGCUUGUAGCACGggCCGagCagg -5'
24238 3' -55.6 NC_005263.2 + 25219 0.7 0.442878
Target:  5'- gGCACGAACGcCGUGCcgaucCCGGC-CGacgaaUCCg -3'
miRNA:   3'- -UGUGCUUGUaGCACG-----GGCCGaGC-----AGG- -5'
24238 3' -55.6 NC_005263.2 + 26986 0.68 0.556269
Target:  5'- cGCGcCGAGCAgcaccCGcugcGCCgGGCUCGUCg -3'
miRNA:   3'- -UGU-GCUUGUa----GCa---CGGgCCGAGCAGg -5'
24238 3' -55.6 NC_005263.2 + 29136 0.67 0.62169
Target:  5'- -aGCGAaaccagACGUCGUGCCgGcugcGCUCGUaaCCg -3'
miRNA:   3'- ugUGCU------UGUAGCACGGgC----CGAGCA--GG- -5'
24238 3' -55.6 NC_005263.2 + 30532 0.68 0.577921
Target:  5'- uGCGCGAGCAgcUCGaUGCgCuGCUCGacgUCCu -3'
miRNA:   3'- -UGUGCUUGU--AGC-ACGgGcCGAGC---AGG- -5'
24238 3' -55.6 NC_005263.2 + 31461 0.7 0.423652
Target:  5'- gACGCGAGCGccugcaaguUCGgcGCCUGGCcCGUCa -3'
miRNA:   3'- -UGUGCUUGU---------AGCa-CGGGCCGaGCAGg -5'
24238 3' -55.6 NC_005263.2 + 31500 0.7 0.466582
Target:  5'- gGCGCGAGCugcugcucgcgcgCGaGCCCGGCgaacgCGUCg -3'
miRNA:   3'- -UGUGCUUGua-----------GCaCGGGCCGa----GCAGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.