miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24238 3' -55.6 NC_005263.2 + 33727 0.66 0.676524
Target:  5'- cGCAccCGGACGagCG-GCCCGGCaUCGggcCCg -3'
miRNA:   3'- -UGU--GCUUGUa-GCaCGGGCCG-AGCa--GG- -5'
24238 3' -55.6 NC_005263.2 + 35180 0.66 0.698239
Target:  5'- --uUGAGCA-CGUaCCCGGCuacgccguuugUCGUCCa -3'
miRNA:   3'- uguGCUUGUaGCAcGGGCCG-----------AGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 35433 0.68 0.534858
Target:  5'- gACGCGAACGaCGacCCCGGCgCG-CCg -3'
miRNA:   3'- -UGUGCUUGUaGCacGGGCCGaGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 36168 0.66 0.676524
Target:  5'- -gGCGAACGUCGauaCCGGC-CGgcugCCg -3'
miRNA:   3'- ugUGCUUGUAGCacgGGCCGaGCa---GG- -5'
24238 3' -55.6 NC_005263.2 + 37401 0.73 0.296743
Target:  5'- uGCGCGAcguGCAUCGcgucGCgCGGC-CGUCCu -3'
miRNA:   3'- -UGUGCU---UGUAGCa---CGgGCCGaGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 38015 0.66 0.654643
Target:  5'- uCGCGAACAUucucgacgCGcUGCCCGcgucGCUCGgcuUCCa -3'
miRNA:   3'- uGUGCUUGUA--------GC-ACGGGC----CGAGC---AGG- -5'
24238 3' -55.6 NC_005263.2 + 38429 0.66 0.654643
Target:  5'- aGCGCGAcguGCGUuaCGUGCUCGGCggCGa-- -3'
miRNA:   3'- -UGUGCU---UGUA--GCACGGGCCGa-GCagg -5'
24238 3' -55.6 NC_005263.2 + 38622 0.66 0.691747
Target:  5'- -uGCGGGCAUCGUgaagcgucagcugcaGCCgGGCgCG-CCg -3'
miRNA:   3'- ugUGCUUGUAGCA---------------CGGgCCGaGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 39066 0.81 0.085231
Target:  5'- aACGCGGACGUCGUagCCGGCUCG-CCg -3'
miRNA:   3'- -UGUGCUUGUAGCAcgGGCCGAGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 43122 0.7 0.462585
Target:  5'- aGCGCGcAACGcUCGUGCCUGGagcgCG-CCg -3'
miRNA:   3'- -UGUGC-UUGU-AGCACGGGCCga--GCaGG- -5'
24238 3' -55.6 NC_005263.2 + 43782 0.7 0.462585
Target:  5'- uGCACG-AUAUCGUGCgCGGCgCGaUCa -3'
miRNA:   3'- -UGUGCuUGUAGCACGgGCCGaGC-AGg -5'
24238 3' -55.6 NC_005263.2 + 45097 0.69 0.471603
Target:  5'- cGCGCGcuACGUCGcggcggaUGCgCCGGCgagCGUCUa -3'
miRNA:   3'- -UGUGCu-UGUAGC-------ACG-GGCCGa--GCAGG- -5'
24238 3' -55.6 NC_005263.2 + 45450 0.68 0.54553
Target:  5'- cGCACGccuGCAccUCGaGCCCGGCgcgaaCGUgCCg -3'
miRNA:   3'- -UGUGCu--UGU--AGCaCGGGCCGa----GCA-GG- -5'
24238 3' -55.6 NC_005263.2 + 46495 0.69 0.517941
Target:  5'- cGCACucGGCGUCGaaguguccgccgcgcUGCUCGGCaCGUCCa -3'
miRNA:   3'- -UGUGc-UUGUAGC---------------ACGGGCCGaGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 46562 0.66 0.698239
Target:  5'- aACACGAA---CGUGCUCGGCaUCGa-- -3'
miRNA:   3'- -UGUGCUUguaGCACGGGCCG-AGCagg -5'
24238 3' -55.6 NC_005263.2 + 47439 0.66 0.676524
Target:  5'- aGCACGGGCAcuacCGUGCCUuGCguuucaCGUUCa -3'
miRNA:   3'- -UGUGCUUGUa---GCACGGGcCGa-----GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.