Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24238 | 3' | -55.6 | NC_005263.2 | + | 22402 | 0.66 | 0.698239 |
Target: 5'- cCGCGAACGUaCGcGCcgCCGuGCUCG-CCg -3' miRNA: 3'- uGUGCUUGUA-GCaCG--GGC-CGAGCaGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 30532 | 0.68 | 0.577921 |
Target: 5'- uGCGCGAGCAgcUCGaUGCgCuGCUCGacgUCCu -3' miRNA: 3'- -UGUGCUUGU--AGC-ACGgGcCGAGC---AGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 26986 | 0.68 | 0.556269 |
Target: 5'- cGCGcCGAGCAgcaccCGcugcGCCgGGCUCGUCg -3' miRNA: 3'- -UGU-GCUUGUa----GCa---CGGgCCGAGCAGg -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 855 | 0.74 | 0.261541 |
Target: 5'- aGCGCGGACAgcguacccgUCGUGCcggCCGGCgcuUCGUUCa -3' miRNA: 3'- -UGUGCUUGU---------AGCACG---GGCCG---AGCAGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 11986 | 0.74 | 0.275198 |
Target: 5'- gGCGCGcAGCGUCGUGUuacgggCCaGCUCGUCg -3' miRNA: 3'- -UGUGC-UUGUAGCACG------GGcCGAGCAGg -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 11869 | 0.72 | 0.3437 |
Target: 5'- uUACGAGCAg-GUGCUCGGgCUCGcgCCg -3' miRNA: 3'- uGUGCUUGUagCACGGGCC-GAGCa-GG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 6115 | 0.72 | 0.360498 |
Target: 5'- gGCACGu-CAU-GUGCUCGGCgUCGUUCa -3' miRNA: 3'- -UGUGCuuGUAgCACGGGCCG-AGCAGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 25219 | 0.7 | 0.442878 |
Target: 5'- gGCACGAACGcCGUGCcgaucCCGGC-CGacgaaUCCg -3' miRNA: 3'- -UGUGCUUGUaGCACG-----GGCCGaGC-----AGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 43782 | 0.7 | 0.462585 |
Target: 5'- uGCACG-AUAUCGUGCgCGGCgCGaUCa -3' miRNA: 3'- -UGUGCuUGUAGCACGgGCCGaGC-AGg -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 8286 | 0.71 | 0.404936 |
Target: 5'- aGCGCGAGCggCGUcGgUCGGaUCGUCCa -3' miRNA: 3'- -UGUGCUUGuaGCA-CgGGCCgAGCAGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 45097 | 0.69 | 0.471603 |
Target: 5'- cGCGCGcuACGUCGcggcggaUGCgCCGGCgagCGUCUa -3' miRNA: 3'- -UGUGCu-UGUAGC-------ACG-GGCCGa--GCAGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 18937 | 0.69 | 0.482743 |
Target: 5'- gGCACGAGCGcUCGagcGCgCCGGUUCGagCg -3' miRNA: 3'- -UGUGCUUGU-AGCa--CG-GGCCGAGCagG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 18857 | 0.69 | 0.503316 |
Target: 5'- cGCGUGAACAacgCGUGCCuCGGCgCG-CCg -3' miRNA: 3'- -UGUGCUUGUa--GCACGG-GCCGaGCaGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 17317 | 0.69 | 0.513745 |
Target: 5'- cGCGCGAAU-UCG-GCCCGGCg---CCg -3' miRNA: 3'- -UGUGCUUGuAGCaCGGGCCGagcaGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 35433 | 0.68 | 0.534858 |
Target: 5'- gACGCGAACGaCGacCCCGGCgCG-CCg -3' miRNA: 3'- -UGUGCUUGUaGCacGGGCCGaGCaGG- -5' |
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24238 | 3' | -55.6 | NC_005263.2 | + | 18615 | 0.66 | 0.709005 |
Target: 5'- uGCGCGggU-UCGUGCagCGGCcCGaCCa -3' miRNA: 3'- -UGUGCuuGuAGCACGg-GCCGaGCaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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