miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24238 3' -55.6 NC_005263.2 + 4283 1.12 0.000523
Target:  5'- gACACGAACAUCGUGCCCGGCUCGUCCg -3'
miRNA:   3'- -UGUGCUUGUAGCACGGGCCGAGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 39066 0.81 0.085231
Target:  5'- aACGCGGACGUCGUagCCGGCUCG-CCg -3'
miRNA:   3'- -UGUGCUUGUAGCAcgGGCCGAGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 14686 0.75 0.212381
Target:  5'- aACACGAA-GUCGgacGCCUGGC-CGUCCu -3'
miRNA:   3'- -UGUGCUUgUAGCa--CGGGCCGaGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 855 0.74 0.261541
Target:  5'- aGCGCGGACAgcguacccgUCGUGCcggCCGGCgcuUCGUUCa -3'
miRNA:   3'- -UGUGCUUGU---------AGCACG---GGCCG---AGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 11986 0.74 0.275198
Target:  5'- gGCGCGcAGCGUCGUGUuacgggCCaGCUCGUCg -3'
miRNA:   3'- -UGUGC-UUGUAGCACG------GGcCGAGCAGg -5'
24238 3' -55.6 NC_005263.2 + 37401 0.73 0.296743
Target:  5'- uGCGCGAcguGCAUCGcgucGCgCGGC-CGUCCu -3'
miRNA:   3'- -UGUGCU---UGUAGCa---CGgGCCGaGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 20558 0.72 0.3437
Target:  5'- cCGCGAcGC-UCGUGCCCGGCcUG-CCg -3'
miRNA:   3'- uGUGCU-UGuAGCACGGGCCGaGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 11869 0.72 0.3437
Target:  5'- uUACGAGCAg-GUGCUCGGgCUCGcgCCg -3'
miRNA:   3'- uGUGCUUGUagCACGGGCC-GAGCa-GG- -5'
24238 3' -55.6 NC_005263.2 + 6115 0.72 0.360498
Target:  5'- gGCACGu-CAU-GUGCUCGGCgUCGUUCa -3'
miRNA:   3'- -UGUGCuuGUAgCACGGGCCG-AGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 9181 0.71 0.369109
Target:  5'- uGCGCG-ACGUCGaGCUCGGCgcggCGcCCg -3'
miRNA:   3'- -UGUGCuUGUAGCaCGGGCCGa---GCaGG- -5'
24238 3' -55.6 NC_005263.2 + 8286 0.71 0.404936
Target:  5'- aGCGCGAGCggCGUcGgUCGGaUCGUCCa -3'
miRNA:   3'- -UGUGCUUGuaGCA-CgGGCCgAGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 19148 0.71 0.408637
Target:  5'- uGCGCGu-CGUCGUGaCCgugcauccgccggcgCGGCUCGUCg -3'
miRNA:   3'- -UGUGCuuGUAGCAC-GG---------------GCCGAGCAGg -5'
24238 3' -55.6 NC_005263.2 + 31461 0.7 0.423652
Target:  5'- gACGCGAGCGccugcaaguUCGgcGCCUGGCcCGUCa -3'
miRNA:   3'- -UGUGCUUGU---------AGCa-CGGGCCGaGCAGg -5'
24238 3' -55.6 NC_005263.2 + 25219 0.7 0.442878
Target:  5'- gGCACGAACGcCGUGCcgaucCCGGC-CGacgaaUCCg -3'
miRNA:   3'- -UGUGCUUGUaGCACG-----GGCCGaGC-----AGG- -5'
24238 3' -55.6 NC_005263.2 + 43122 0.7 0.462585
Target:  5'- aGCGCGcAACGcUCGUGCCUGGagcgCG-CCg -3'
miRNA:   3'- -UGUGC-UUGU-AGCACGGGCCga--GCaGG- -5'
24238 3' -55.6 NC_005263.2 + 43782 0.7 0.462585
Target:  5'- uGCACG-AUAUCGUGCgCGGCgCGaUCa -3'
miRNA:   3'- -UGUGCuUGUAGCACGgGCCGaGC-AGg -5'
24238 3' -55.6 NC_005263.2 + 31500 0.7 0.466582
Target:  5'- gGCGCGAGCugcugcucgcgcgCGaGCCCGGCgaacgCGUCg -3'
miRNA:   3'- -UGUGCUUGua-----------GCaCGGGCCGa----GCAGg -5'
24238 3' -55.6 NC_005263.2 + 45097 0.69 0.471603
Target:  5'- cGCGCGcuACGUCGcggcggaUGCgCCGGCgagCGUCUa -3'
miRNA:   3'- -UGUGCu-UGUAGC-------ACG-GGCCGa--GCAGG- -5'
24238 3' -55.6 NC_005263.2 + 16722 0.69 0.482743
Target:  5'- cCGCGAGCGguggCGcaauUGCCCGGCgucaGUCa -3'
miRNA:   3'- uGUGCUUGUa---GC----ACGGGCCGag--CAGg -5'
24238 3' -55.6 NC_005263.2 + 18937 0.69 0.482743
Target:  5'- gGCACGAGCGcUCGagcGCgCCGGUUCGagCg -3'
miRNA:   3'- -UGUGCUUGU-AGCa--CG-GGCCGAGCagG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.