miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24238 3' -55.6 NC_005263.2 + 2564 0.67 0.610711
Target:  5'- aACGCGAGacgAUCG-GCaaucaCGGC-CGUCCa -3'
miRNA:   3'- -UGUGCUUg--UAGCaCGg----GCCGaGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 6543 0.67 0.588817
Target:  5'- cGCGCGAaagcucGCAUCGccGCCaCGGCgCG-CCg -3'
miRNA:   3'- -UGUGCU------UGUAGCa-CGG-GCCGaGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 3515 0.67 0.588817
Target:  5'- cGCGCGGcaaucuucuucaGCGucUCGcGgCCGGCgUCGUCCa -3'
miRNA:   3'- -UGUGCU------------UGU--AGCaCgGGCCG-AGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 24376 0.68 0.577921
Target:  5'- gGCGCGAACAUCGUGCa-GGUagGg-- -3'
miRNA:   3'- -UGUGCUUGUAGCACGggCCGagCagg -5'
24238 3' -55.6 NC_005263.2 + 30532 0.68 0.577921
Target:  5'- uGCGCGAGCAgcUCGaUGCgCuGCUCGacgUCCu -3'
miRNA:   3'- -UGUGCUUGU--AGC-ACGgGcCGAGC---AGG- -5'
24238 3' -55.6 NC_005263.2 + 18538 0.68 0.577921
Target:  5'- cCGCGAGCGcguucaagaaguUCGcgcaGCCCGGCaccgguggCGUCCc -3'
miRNA:   3'- uGUGCUUGU------------AGCa---CGGGCCGa-------GCAGG- -5'
24238 3' -55.6 NC_005263.2 + 13572 0.68 0.576833
Target:  5'- gGCACGAGCggCGUGUCCaugaucuGG-UCGUCg -3'
miRNA:   3'- -UGUGCUUGuaGCACGGG-------CCgAGCAGg -5'
24238 3' -55.6 NC_005263.2 + 26986 0.68 0.556269
Target:  5'- cGCGcCGAGCAgcaccCGcugcGCCgGGCUCGUCg -3'
miRNA:   3'- -UGU-GCUUGUa----GCa---CGGgCCGAGCAGg -5'
24238 3' -55.6 NC_005263.2 + 23622 0.68 0.556269
Target:  5'- gGCACcGugGUCGaGCCgGaGCUCGUCg -3'
miRNA:   3'- -UGUGcUugUAGCaCGGgC-CGAGCAGg -5'
24238 3' -55.6 NC_005263.2 + 45450 0.68 0.54553
Target:  5'- cGCACGccuGCAccUCGaGCCCGGCgcgaaCGUgCCg -3'
miRNA:   3'- -UGUGCu--UGU--AGCaCGGGCCGa----GCA-GG- -5'
24238 3' -55.6 NC_005263.2 + 35433 0.68 0.534858
Target:  5'- gACGCGAACGaCGacCCCGGCgCG-CCg -3'
miRNA:   3'- -UGUGCUUGUaGCacGGGCCGaGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 11523 0.68 0.534858
Target:  5'- cGCGCGAugAaggCG-GCgCGGUUCGUCg -3'
miRNA:   3'- -UGUGCUugUa--GCaCGgGCCGAGCAGg -5'
24238 3' -55.6 NC_005263.2 + 46495 0.69 0.517941
Target:  5'- cGCACucGGCGUCGaaguguccgccgcgcUGCUCGGCaCGUCCa -3'
miRNA:   3'- -UGUGc-UUGUAGC---------------ACGGGCCGaGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 17317 0.69 0.513745
Target:  5'- cGCGCGAAU-UCG-GCCCGGCg---CCg -3'
miRNA:   3'- -UGUGCUUGuAGCaCGGGCCGagcaGG- -5'
24238 3' -55.6 NC_005263.2 + 4704 0.69 0.513745
Target:  5'- -gGCGAGCuUCuUG-CCGGaCUCGUCCg -3'
miRNA:   3'- ugUGCUUGuAGcACgGGCC-GAGCAGG- -5'
24238 3' -55.6 NC_005263.2 + 18857 0.69 0.503316
Target:  5'- cGCGUGAACAacgCGUGCCuCGGCgCG-CCg -3'
miRNA:   3'- -UGUGCUUGUa--GCACGG-GCCGaGCaGG- -5'
24238 3' -55.6 NC_005263.2 + 18937 0.69 0.482743
Target:  5'- gGCACGAGCGcUCGagcGCgCCGGUUCGagCg -3'
miRNA:   3'- -UGUGCUUGU-AGCa--CG-GGCCGAGCagG- -5'
24238 3' -55.6 NC_005263.2 + 16722 0.69 0.482743
Target:  5'- cCGCGAGCGguggCGcaauUGCCCGGCgucaGUCa -3'
miRNA:   3'- uGUGCUUGUa---GC----ACGGGCCGag--CAGg -5'
24238 3' -55.6 NC_005263.2 + 45097 0.69 0.471603
Target:  5'- cGCGCGcuACGUCGcggcggaUGCgCCGGCgagCGUCUa -3'
miRNA:   3'- -UGUGCu-UGUAGC-------ACG-GGCCGa--GCAGG- -5'
24238 3' -55.6 NC_005263.2 + 31500 0.7 0.466582
Target:  5'- gGCGCGAGCugcugcucgcgcgCGaGCCCGGCgaacgCGUCg -3'
miRNA:   3'- -UGUGCUUGua-----------GCaCGGGCCGa----GCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.