miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24238 5' -54.6 NC_005263.2 + 25730 0.69 0.505176
Target:  5'- cUGGcgcugCGCGCCGUGCACGAccUGUCc-- -3'
miRNA:   3'- cACUa----GCGCGGCGCGUGCU--AUAGcac -5'
24238 5' -54.6 NC_005263.2 + 25645 0.68 0.614321
Target:  5'- uUGAUCGCGCUGuCGCugcCGuUGUUGUa -3'
miRNA:   3'- cACUAGCGCGGC-GCGu--GCuAUAGCAc -5'
24238 5' -54.6 NC_005263.2 + 24619 0.66 0.703081
Target:  5'- aGUGGUaCGCGauGUccaucggauGCGCGAUGUCGUa -3'
miRNA:   3'- -CACUA-GCGCggCG---------CGUGCUAUAGCAc -5'
24238 5' -54.6 NC_005263.2 + 23820 0.76 0.227922
Target:  5'- uUGAUCGuCGCCGCGaaaGCGccgGUCGUGu -3'
miRNA:   3'- cACUAGC-GCGGCGCg--UGCua-UAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 20016 0.72 0.38674
Target:  5'- -cGAUCG-GCCGCGCcaacacACGggAUCGUGc -3'
miRNA:   3'- caCUAGCgCGGCGCG------UGCuaUAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 19931 0.7 0.453698
Target:  5'- -aGAagGCGCCGCGCuauuCGAcGUCGg- -3'
miRNA:   3'- caCUagCGCGGCGCGu---GCUaUAGCac -5'
24238 5' -54.6 NC_005263.2 + 19744 0.66 0.724787
Target:  5'- -cGAUCgGCGCuggCGCGCugGcgGcgcUCGUGg -3'
miRNA:   3'- caCUAG-CGCG---GCGCGugCuaU---AGCAC- -5'
24238 5' -54.6 NC_005263.2 + 18759 0.68 0.592082
Target:  5'- -cGAUCGUaggcggcgcgguGCuCGCGCugGuUAUCGUGc -3'
miRNA:   3'- caCUAGCG------------CG-GCGCGugCuAUAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 17520 0.72 0.36884
Target:  5'- cUGAUCGCGCUguacaGCGCGCGcagcggCGUGa -3'
miRNA:   3'- cACUAGCGCGG-----CGCGUGCuaua--GCAC- -5'
24238 5' -54.6 NC_005263.2 + 17493 0.69 0.54809
Target:  5'- cUGAUCGCGCgCG-GCGCGucgAUCGa- -3'
miRNA:   3'- cACUAGCGCG-GCgCGUGCua-UAGCac -5'
24238 5' -54.6 NC_005263.2 + 17401 0.66 0.703081
Target:  5'- -cGGccgCGCGCCugGCGgGCGGUGUCGc- -3'
miRNA:   3'- caCUa--GCGCGG--CGCgUGCUAUAGCac -5'
24238 5' -54.6 NC_005263.2 + 15180 0.67 0.636623
Target:  5'- aGUGAUCGacgcgaGCgCGcCGCGCGAcGUCGg- -3'
miRNA:   3'- -CACUAGCg-----CG-GC-GCGUGCUaUAGCac -5'
24238 5' -54.6 NC_005263.2 + 14069 0.72 0.38674
Target:  5'- uUGAgCGCGCCGCGC-CGGcccaUGUCGg- -3'
miRNA:   3'- cACUaGCGCGGCGCGuGCU----AUAGCac -5'
24238 5' -54.6 NC_005263.2 + 12176 0.69 0.526469
Target:  5'- -cGAUCGCgGCCGUGuCGCGAUGaagCGg- -3'
miRNA:   3'- caCUAGCG-CGGCGC-GUGCUAUa--GCac -5'
24238 5' -54.6 NC_005263.2 + 11800 0.67 0.68109
Target:  5'- -cGAaCGCGCCggucgucacuucGCGCGCGAacgUGUCGa- -3'
miRNA:   3'- caCUaGCGCGG------------CGCGUGCU---AUAGCac -5'
24238 5' -54.6 NC_005263.2 + 11592 0.67 0.68109
Target:  5'- -aGGUCGCGCC-C-CGCGAUGaaGUGg -3'
miRNA:   3'- caCUAGCGCGGcGcGUGCUAUagCAC- -5'
24238 5' -54.6 NC_005263.2 + 11516 0.66 0.713975
Target:  5'- cUGGUCGCGCgCGaugaaggcgGCGCGGUucGUCGUc -3'
miRNA:   3'- cACUAGCGCG-GCg--------CGUGCUA--UAGCAc -5'
24238 5' -54.6 NC_005263.2 + 10933 0.74 0.280846
Target:  5'- cGUGAUCGCGUCGUGCGgGGUGagcgcuUCGa- -3'
miRNA:   3'- -CACUAGCGCGGCGCGUgCUAU------AGCac -5'
24238 5' -54.6 NC_005263.2 + 10746 0.66 0.724787
Target:  5'- --aGUCGCGCaCGCGCAUGcgGcCGUc -3'
miRNA:   3'- cacUAGCGCG-GCGCGUGCuaUaGCAc -5'
24238 5' -54.6 NC_005263.2 + 9784 0.68 0.592082
Target:  5'- -cGGUCGCG-CGCGCAuCGAUcucAUCGa- -3'
miRNA:   3'- caCUAGCGCgGCGCGU-GCUA---UAGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.