miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24238 5' -54.6 NC_005263.2 + 9617 0.67 0.625469
Target:  5'- --cAUCGCGUCGCGCcACGG-AUCGa- -3'
miRNA:   3'- cacUAGCGCGGCGCG-UGCUaUAGCac -5'
24238 5' -54.6 NC_005263.2 + 37408 0.68 0.614321
Target:  5'- cGUGcAUCGCGUCGCGCGgcCGuccucGUCGUc -3'
miRNA:   3'- -CAC-UAGCGCGGCGCGU--GCua---UAGCAc -5'
24238 5' -54.6 NC_005263.2 + 25645 0.68 0.614321
Target:  5'- uUGAUCGCGCUGuCGCugcCGuUGUUGUa -3'
miRNA:   3'- cACUAGCGCGGC-GCGu--GCuAUAGCAc -5'
24238 5' -54.6 NC_005263.2 + 41501 0.68 0.614321
Target:  5'- -cGAgCGCGCCGCcgaaCGCGAUcgCGUc -3'
miRNA:   3'- caCUaGCGCGGCGc---GUGCUAuaGCAc -5'
24238 5' -54.6 NC_005263.2 + 3349 0.68 0.614321
Target:  5'- -----gGCGCCGCGCGCGG--UCGa- -3'
miRNA:   3'- cacuagCGCGGCGCGUGCUauAGCac -5'
24238 5' -54.6 NC_005263.2 + 18759 0.68 0.592082
Target:  5'- -cGAUCGUaggcggcgcgguGCuCGCGCugGuUAUCGUGc -3'
miRNA:   3'- caCUAGCG------------CG-GCGCGugCuAUAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 30285 0.68 0.592082
Target:  5'- --aAUCGgGCCGCGCGCGGcAUCc-- -3'
miRNA:   3'- cacUAGCgCGGCGCGUGCUaUAGcac -5'
24238 5' -54.6 NC_005263.2 + 2754 0.68 0.592082
Target:  5'- -aGAUCGCgGCCGcCGUGCcg-GUCGUGu -3'
miRNA:   3'- caCUAGCG-CGGC-GCGUGcuaUAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 9784 0.68 0.592082
Target:  5'- -cGGUCGCG-CGCGCAuCGAUcucAUCGa- -3'
miRNA:   3'- caCUAGCGCgGCGCGU-GCUA---UAGCac -5'
24238 5' -54.6 NC_005263.2 + 43822 0.68 0.569982
Target:  5'- -gGA-CGaGCCGgGCACGAUGuUCGUGu -3'
miRNA:   3'- caCUaGCgCGGCgCGUGCUAU-AGCAC- -5'
24238 5' -54.6 NC_005263.2 + 29488 0.68 0.565585
Target:  5'- cUGGUCGgGCCGCuGCACGAacccgcgcauggcGUCGUu -3'
miRNA:   3'- cACUAGCgCGGCG-CGUGCUa------------UAGCAc -5'
24238 5' -54.6 NC_005263.2 + 45315 0.69 0.54809
Target:  5'- aUGA-CGCGCUGCGCAauCGcuucacgGUCGUGa -3'
miRNA:   3'- cACUaGCGCGGCGCGU--GCua-----UAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 37356 0.69 0.54809
Target:  5'- -cGGUCGCgGCCGUGCuCGAUGcgcUCGa- -3'
miRNA:   3'- caCUAGCG-CGGCGCGuGCUAU---AGCac -5'
24238 5' -54.6 NC_005263.2 + 17493 0.69 0.54809
Target:  5'- cUGAUCGCGCgCG-GCGCGucgAUCGa- -3'
miRNA:   3'- cACUAGCGCG-GCgCGUGCua-UAGCac -5'
24238 5' -54.6 NC_005263.2 + 12176 0.69 0.526469
Target:  5'- -cGAUCGCgGCCGUGuCGCGAUGaagCGg- -3'
miRNA:   3'- caCUAGCG-CGGCGC-GUGCUAUa--GCac -5'
24238 5' -54.6 NC_005263.2 + 25730 0.69 0.505176
Target:  5'- cUGGcgcugCGCGCCGUGCACGAccUGUCc-- -3'
miRNA:   3'- cACUa----GCGCGGCGCGUGCU--AUAGcac -5'
24238 5' -54.6 NC_005263.2 + 33416 0.69 0.504121
Target:  5'- -cGAUCgccuugaGCGCCGCGCGCGcguagcgGUCGg- -3'
miRNA:   3'- caCUAG-------CGCGGCGCGUGCua-----UAGCac -5'
24238 5' -54.6 NC_005263.2 + 42128 0.7 0.463772
Target:  5'- --cGUCGUGCUGCGCgACGAgg-CGUGu -3'
miRNA:   3'- cacUAGCGCGGCGCG-UGCUauaGCAC- -5'
24238 5' -54.6 NC_005263.2 + 26923 0.7 0.453698
Target:  5'- ----cCGCGCCGCGCGCGuccgCGUc -3'
miRNA:   3'- cacuaGCGCGGCGCGUGCuauaGCAc -5'
24238 5' -54.6 NC_005263.2 + 19931 0.7 0.453698
Target:  5'- -aGAagGCGCCGCGCuauuCGAcGUCGg- -3'
miRNA:   3'- caCUagCGCGGCGCGu---GCUaUAGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.