miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24239 3' -56.5 NC_005263.2 + 35480 0.66 0.633136
Target:  5'- cGUGCucaccuACGUCCAGcgCAuGGCCGa-- -3'
miRNA:   3'- uCACGc-----UGCAGGUCuaGU-CCGGCacc -5'
24239 3' -56.5 NC_005263.2 + 37337 0.66 0.633136
Target:  5'- gAGgGCGAUGcguUCCAGucgGUCGcGGCCGUGc -3'
miRNA:   3'- -UCaCGCUGC---AGGUC---UAGU-CCGGCACc -5'
24239 3' -56.5 NC_005263.2 + 43609 0.66 0.633136
Target:  5'- aAGUcGCGAUGggCCAGAUC-GGCCa--- -3'
miRNA:   3'- -UCA-CGCUGCa-GGUCUAGuCCGGcacc -5'
24239 3' -56.5 NC_005263.2 + 10022 0.66 0.622193
Target:  5'- aAGUGCuuCGcaUCCAGGUCAGGgCGccaGGu -3'
miRNA:   3'- -UCACGcuGC--AGGUCUAGUCCgGCa--CC- -5'
24239 3' -56.5 NC_005263.2 + 20791 0.66 0.622193
Target:  5'- cGU-CGGCGcgUCGGGUCGcGCCGUGGu -3'
miRNA:   3'- uCAcGCUGCa-GGUCUAGUcCGGCACC- -5'
24239 3' -56.5 NC_005263.2 + 22593 0.66 0.61126
Target:  5'- gGGUGCGGCuucUCCGG-UCAGGgcacgacgaCCGUGa -3'
miRNA:   3'- -UCACGCUGc--AGGUCuAGUCC---------GGCACc -5'
24239 3' -56.5 NC_005263.2 + 44976 0.66 0.61126
Target:  5'- cGGUGCuGACcuGUCCgGGAUCgaggcgcgcauGGcGCCGUGGc -3'
miRNA:   3'- -UCACG-CUG--CAGG-UCUAG-----------UC-CGGCACC- -5'
24239 3' -56.5 NC_005263.2 + 553 0.66 0.61126
Target:  5'- -uUGC-ACGUUCAGGgcgcgCAGGCCuUGGa -3'
miRNA:   3'- ucACGcUGCAGGUCUa----GUCCGGcACC- -5'
24239 3' -56.5 NC_005263.2 + 8703 0.67 0.557035
Target:  5'- aGGUGCGGCGa-CAGGUC-GGCCGc-- -3'
miRNA:   3'- -UCACGCUGCagGUCUAGuCCGGCacc -5'
24239 3' -56.5 NC_005263.2 + 5587 0.68 0.525145
Target:  5'- uGUGCGGcCGUCgGGcAUCcgcacggcgAGGCCGUGcGg -3'
miRNA:   3'- uCACGCU-GCAGgUC-UAG---------UCCGGCAC-C- -5'
24239 3' -56.5 NC_005263.2 + 8274 0.68 0.504273
Target:  5'- --aGCGACGgaucguuGAUCAGGCCGUa- -3'
miRNA:   3'- ucaCGCUGCaggu---CUAGUCCGGCAcc -5'
24239 3' -56.5 NC_005263.2 + 23956 0.7 0.415446
Target:  5'- gAGcGUGACGgugCCAcccgucaggccGGUCAGuGCCGUGGu -3'
miRNA:   3'- -UCaCGCUGCa--GGU-----------CUAGUC-CGGCACC- -5'
24239 3' -56.5 NC_005263.2 + 9970 0.7 0.370421
Target:  5'- uGUGCGACcagugCCGGG-CAGGCCGUu- -3'
miRNA:   3'- uCACGCUGca---GGUCUaGUCCGGCAcc -5'
24239 3' -56.5 NC_005263.2 + 4387 1.1 0.000627
Target:  5'- aAGUGCGACGUCCAGAUCAGGCCGUGGu -3'
miRNA:   3'- -UCACGCUGCAGGUCUAGUCCGGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.