miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24240 3' -52.7 NC_005263.2 + 29527 0.66 0.813293
Target:  5'- gGCGCGCCAGCagUgGCCGGgA-CGc- -3'
miRNA:   3'- -CGUGCGGUCGaaAgUGGCUgUaGCuu -5'
24240 3' -52.7 NC_005263.2 + 23210 0.66 0.813293
Target:  5'- uGCAcCGCC-GCUUgCACCGACGccuugCGGu -3'
miRNA:   3'- -CGU-GCGGuCGAAaGUGGCUGUa----GCUu -5'
24240 3' -52.7 NC_005263.2 + 40414 0.66 0.813293
Target:  5'- aCACGCCGcGCg---GCCGAC-UCGAAc -3'
miRNA:   3'- cGUGCGGU-CGaaagUGGCUGuAGCUU- -5'
24240 3' -52.7 NC_005263.2 + 46244 0.66 0.813293
Target:  5'- aGCGCGCCGGUggUCuguccugggaugACaCGGgGUCGGAu -3'
miRNA:   3'- -CGUGCGGUCGaaAG------------UG-GCUgUAGCUU- -5'
24240 3' -52.7 NC_005263.2 + 28200 0.66 0.813293
Target:  5'- uGCAugccguUGCCGGCgUUCACaggcaCGGCGUCGGc -3'
miRNA:   3'- -CGU------GCGGUCGaAAGUG-----GCUGUAGCUu -5'
24240 3' -52.7 NC_005263.2 + 14072 0.66 0.807418
Target:  5'- aGCGCGCCgcgccggcccaugucGGCUggUACCGGCugcgCGGc -3'
miRNA:   3'- -CGUGCGG---------------UCGAaaGUGGCUGua--GCUu -5'
24240 3' -52.7 NC_005263.2 + 32283 0.66 0.807418
Target:  5'- aGCGCGCCAGgUcggaGCCGgucuugacgagugucACGUCGAu -3'
miRNA:   3'- -CGUGCGGUCgAaag-UGGC---------------UGUAGCUu -5'
24240 3' -52.7 NC_005263.2 + 2001 0.66 0.803462
Target:  5'- uCACGCCGGCg--CGgaugauacCCGACGUCa-- -3'
miRNA:   3'- cGUGCGGUCGaaaGU--------GGCUGUAGcuu -5'
24240 3' -52.7 NC_005263.2 + 12673 0.66 0.793438
Target:  5'- gGCGCGCCGGgg-UCGUCGuucGCGUCGAGc -3'
miRNA:   3'- -CGUGCGGUCgaaAGUGGC---UGUAGCUU- -5'
24240 3' -52.7 NC_005263.2 + 46683 0.66 0.793438
Target:  5'- cGCGCGCagccaaggCGGCgcgCGCCGACGacaagcaauaaUCGAAc -3'
miRNA:   3'- -CGUGCG--------GUCGaaaGUGGCUGU-----------AGCUU- -5'
24240 3' -52.7 NC_005263.2 + 35249 0.66 0.793438
Target:  5'- cGCACGCCGGCcc-CAUCGAauaCGGg -3'
miRNA:   3'- -CGUGCGGUCGaaaGUGGCUguaGCUu -5'
24240 3' -52.7 NC_005263.2 + 3565 0.66 0.793438
Target:  5'- aGCGCGUCGGCcgaccacaucgUUCGCC-ACAUCGc- -3'
miRNA:   3'- -CGUGCGGUCGa----------AAGUGGcUGUAGCuu -5'
24240 3' -52.7 NC_005263.2 + 27696 0.66 0.787336
Target:  5'- uGCGCGCCGGC----GCCGGCGgccgcauaggcuugcUCGGu -3'
miRNA:   3'- -CGUGCGGUCGaaagUGGCUGU---------------AGCUu -5'
24240 3' -52.7 NC_005263.2 + 38768 0.66 0.783233
Target:  5'- uCACGCCGGCgcaaggcaUUGCCGGCGacuucgccagcUCGAAc -3'
miRNA:   3'- cGUGCGGUCGaa------AGUGGCUGU-----------AGCUU- -5'
24240 3' -52.7 NC_005263.2 + 22135 0.66 0.783233
Target:  5'- cGCGauCGCCGGaCggggCGCUGugGUCGAAc -3'
miRNA:   3'- -CGU--GCGGUC-Gaaa-GUGGCugUAGCUU- -5'
24240 3' -52.7 NC_005263.2 + 41495 0.66 0.783233
Target:  5'- cCGCGCCgAGCg--CGCCGccgaacgcgaucGCGUCGAc -3'
miRNA:   3'- cGUGCGG-UCGaaaGUGGC------------UGUAGCUu -5'
24240 3' -52.7 NC_005263.2 + 37706 0.66 0.783233
Target:  5'- cGCGCGCCGGacccgcUCGCCGGC--CGGc -3'
miRNA:   3'- -CGUGCGGUCgaa---AGUGGCUGuaGCUu -5'
24240 3' -52.7 NC_005263.2 + 38040 0.66 0.772859
Target:  5'- cGCGuCGCuCGGCUUccagugCGCCGACccguUCGAu -3'
miRNA:   3'- -CGU-GCG-GUCGAAa-----GUGGCUGu---AGCUu -5'
24240 3' -52.7 NC_005263.2 + 13300 0.66 0.772859
Target:  5'- uGCGCaGCCAGUUgUCGauguaCGGCAUCGc- -3'
miRNA:   3'- -CGUG-CGGUCGAaAGUg----GCUGUAGCuu -5'
24240 3' -52.7 NC_005263.2 + 6106 0.66 0.772859
Target:  5'- cGCACuGCCGGCacgUCAugugcUCGGCGUCGu- -3'
miRNA:   3'- -CGUG-CGGUCGaa-AGU-----GGCUGUAGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.