miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24240 5' -59.8 NC_005263.2 + 2387 0.66 0.47183
Target:  5'- aCCgagCGGCAGGccgGGGCaccaCGCuUCGCc -3'
miRNA:   3'- -GGaa-GCCGUCCca-CUCGg---GCGcAGCG- -5'
24240 5' -59.8 NC_005263.2 + 1887 0.66 0.470853
Target:  5'- cCCggaUUGGCGGGGUugccGAucaggaaguaccaGCCgCGCGUCuGCa -3'
miRNA:   3'- -GGa--AGCCGUCCCA----CU-------------CGG-GCGCAG-CG- -5'
24240 5' -59.8 NC_005263.2 + 12618 0.66 0.468902
Target:  5'- gCCUUCGGCcaugcgcuggacguaGGUGAGCaCGcCGUCGa -3'
miRNA:   3'- -GGAAGCCGuc-------------CCACUCGgGC-GCAGCg -5'
24240 5' -59.8 NC_005263.2 + 8770 0.66 0.46114
Target:  5'- --aUCGGCugccagccccGGGUGAGCagccaacCUGCGaUCGCg -3'
miRNA:   3'- ggaAGCCGu---------CCCACUCG-------GGCGC-AGCG- -5'
24240 5' -59.8 NC_005263.2 + 40257 0.66 0.442982
Target:  5'- aCCUggGGCGcGGUGAucuuccGCCCGU-UCGCg -3'
miRNA:   3'- -GGAagCCGUcCCACU------CGGGCGcAGCG- -5'
24240 5' -59.8 NC_005263.2 + 32772 0.67 0.433589
Target:  5'- gCCgcgUCGGgGuucucGGUGucGGCCCGCGccUCGCg -3'
miRNA:   3'- -GGa--AGCCgUc----CCAC--UCGGGCGC--AGCG- -5'
24240 5' -59.8 NC_005263.2 + 8768 0.67 0.415155
Target:  5'- gCUgcgCGGCAGGaUGAcgccgGCCCGCG-CGa -3'
miRNA:   3'- gGAa--GCCGUCCcACU-----CGGGCGCaGCg -5'
24240 5' -59.8 NC_005263.2 + 23613 0.67 0.388427
Target:  5'- aCgUUCGGCGGcaccguGGUcGAGCCgGagcuCGUCGCg -3'
miRNA:   3'- -GgAAGCCGUC------CCA-CUCGGgC----GCAGCG- -5'
24240 5' -59.8 NC_005263.2 + 38089 0.68 0.338472
Target:  5'- --cUCGGCGGcGGUGcugcGCCCGCaccuggCGCg -3'
miRNA:   3'- ggaAGCCGUC-CCACu---CGGGCGca----GCG- -5'
24240 5' -59.8 NC_005263.2 + 27547 0.69 0.315303
Target:  5'- ---cCGGCAGGccGGGCacgaGCGUCGCg -3'
miRNA:   3'- ggaaGCCGUCCcaCUCGgg--CGCAGCG- -5'
24240 5' -59.8 NC_005263.2 + 2285 0.7 0.265308
Target:  5'- gCCgUCGGCAGGucgugcgccGUGGccggcacGCCCGCGUUGa -3'
miRNA:   3'- -GGaAGCCGUCC---------CACU-------CGGGCGCAGCg -5'
24240 5' -59.8 NC_005263.2 + 4783 1.13 0.000185
Target:  5'- uCCUUCGGCAGGGUGAGCCCGCGUCGCg -3'
miRNA:   3'- -GGAAGCCGUCCCACUCGGGCGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.