miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24241 3' -52.3 NC_005263.2 + 15021 0.66 0.849603
Target:  5'- cCGcCGUGUUAAACucGCGUCAcGCGGAu -3'
miRNA:   3'- cGCaGCGCGGUUUGu-CGCAGU-UGUCU- -5'
24241 3' -52.3 NC_005263.2 + 2426 0.66 0.849603
Target:  5'- aGCGgcagCGUGCCuugguACGGCG-CGGCAa- -3'
miRNA:   3'- -CGCa---GCGCGGuu---UGUCGCaGUUGUcu -5'
24241 3' -52.3 NC_005263.2 + 29243 0.66 0.849603
Target:  5'- aGCGgCGCGCCGAGgCAcGCGUUGuucacGCGGu -3'
miRNA:   3'- -CGCaGCGCGGUUU-GU-CGCAGU-----UGUCu -5'
24241 3' -52.3 NC_005263.2 + 45211 0.66 0.849603
Target:  5'- gGCGUccaccugcCGC-CCGAACAG-GUCAGCgAGAu -3'
miRNA:   3'- -CGCA--------GCGcGGUUUGUCgCAGUUG-UCU- -5'
24241 3' -52.3 NC_005263.2 + 38275 0.66 0.849603
Target:  5'- cGCGcCGCGCCGuu---CGUCAACGuGAu -3'
miRNA:   3'- -CGCaGCGCGGUuugucGCAGUUGU-CU- -5'
24241 3' -52.3 NC_005263.2 + 9912 0.66 0.846961
Target:  5'- aGCGgUGUGCCGAGaucggcagcuggauCAGCGUCGAacgcgaAGAa -3'
miRNA:   3'- -CGCaGCGCGGUUU--------------GUCGCAGUUg-----UCU- -5'
24241 3' -52.3 NC_005263.2 + 14905 0.66 0.840713
Target:  5'- uGCGgcacgagUGCGCCAAGCGGCaaGUC--CGGGu -3'
miRNA:   3'- -CGCa------GCGCGGUUUGUCG--CAGuuGUCU- -5'
24241 3' -52.3 NC_005263.2 + 971 0.66 0.839811
Target:  5'- gGCGgucgccugCGCGUCGGACGGCGcuucguuUCAuCGGGc -3'
miRNA:   3'- -CGCa-------GCGCGGUUUGUCGC-------AGUuGUCU- -5'
24241 3' -52.3 NC_005263.2 + 17523 0.66 0.831591
Target:  5'- --aUCGCGCUguACAGCGcgcgCAGCGGc -3'
miRNA:   3'- cgcAGCGCGGuuUGUCGCa---GUUGUCu -5'
24241 3' -52.3 NC_005263.2 + 20904 0.66 0.831591
Target:  5'- aCGggaUGaCGCCGGAUGGCGUguACGGAu -3'
miRNA:   3'- cGCa--GC-GCGGUUUGUCGCAguUGUCU- -5'
24241 3' -52.3 NC_005263.2 + 20844 0.66 0.831591
Target:  5'- cGCaGUCGgGCCAAuucgacGCgAGCGUCGcaACGGc -3'
miRNA:   3'- -CG-CAGCgCGGUU------UG-UCGCAGU--UGUCu -5'
24241 3' -52.3 NC_005263.2 + 4729 0.66 0.831591
Target:  5'- cCGcCGCGCCAAAUu-CGUCAAaGGAa -3'
miRNA:   3'- cGCaGCGCGGUUUGucGCAGUUgUCU- -5'
24241 3' -52.3 NC_005263.2 + 3758 0.66 0.831591
Target:  5'- uGC-UCGCGCgCGGGCAGCGgc-ACGGu -3'
miRNA:   3'- -CGcAGCGCG-GUUUGUCGCaguUGUCu -5'
24241 3' -52.3 NC_005263.2 + 27122 0.66 0.830666
Target:  5'- aCGUCGaCGCgCAGGCGcgcagccGCGUCGGCGa- -3'
miRNA:   3'- cGCAGC-GCG-GUUUGU-------CGCAGUUGUcu -5'
24241 3' -52.3 NC_005263.2 + 23748 0.66 0.822247
Target:  5'- --uUCGCGCCAuccccGACuacgGGCGUCGGCGc- -3'
miRNA:   3'- cgcAGCGCGGU-----UUG----UCGCAGUUGUcu -5'
24241 3' -52.3 NC_005263.2 + 24313 0.66 0.822247
Target:  5'- cGCG-CGCGUCGcauCGGCGgucgUAACGGGc -3'
miRNA:   3'- -CGCaGCGCGGUuu-GUCGCa---GUUGUCU- -5'
24241 3' -52.3 NC_005263.2 + 36216 0.66 0.822247
Target:  5'- cGCGcagGCGCCcGGCGccGCGUCGuCAGAu -3'
miRNA:   3'- -CGCag-CGCGGuUUGU--CGCAGUuGUCU- -5'
24241 3' -52.3 NC_005263.2 + 21012 0.66 0.816538
Target:  5'- cCGUCgaaGCGCCAgacuucaucgauggcAACGGCGUgCAGCAu- -3'
miRNA:   3'- cGCAG---CGCGGU---------------UUGUCGCA-GUUGUcu -5'
24241 3' -52.3 NC_005263.2 + 30434 0.66 0.812691
Target:  5'- uGCgGUCGaGCgCGAGCAGCGUgAGCGc- -3'
miRNA:   3'- -CG-CAGCgCG-GUUUGUCGCAgUUGUcu -5'
24241 3' -52.3 NC_005263.2 + 41071 0.66 0.812691
Target:  5'- cGCGaUGCGCCAuccguCGGCGcgCGACAu- -3'
miRNA:   3'- -CGCaGCGCGGUuu---GUCGCa-GUUGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.