miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24241 3' -52.3 NC_005263.2 + 3252 0.66 0.812691
Target:  5'- cGCGaUCGcCGCgCAGACAGgCGUCGaguaucgccucGCAGu -3'
miRNA:   3'- -CGC-AGC-GCG-GUUUGUC-GCAGU-----------UGUCu -5'
24241 3' -52.3 NC_005263.2 + 45562 0.66 0.812691
Target:  5'- cGCGuUCGCgGCCugGAACAGCGgu--CAGGc -3'
miRNA:   3'- -CGC-AGCG-CGG--UUUGUCGCaguuGUCU- -5'
24241 3' -52.3 NC_005263.2 + 41071 0.66 0.812691
Target:  5'- cGCGaUGCGCCAuccguCGGCGcgCGACAu- -3'
miRNA:   3'- -CGCaGCGCGGUuu---GUCGCa-GUUGUcu -5'
24241 3' -52.3 NC_005263.2 + 10743 0.66 0.812691
Target:  5'- uGCaGUCGCGCacgcgcauGCGGCcGUCGGCAu- -3'
miRNA:   3'- -CG-CAGCGCGguu-----UGUCG-CAGUUGUcu -5'
24241 3' -52.3 NC_005263.2 + 28438 0.66 0.811724
Target:  5'- aCGUCGCgGgCAGcGCGGCGuaggcauagcgcaUCAGCAGAa -3'
miRNA:   3'- cGCAGCG-CgGUU-UGUCGC-------------AGUUGUCU- -5'
24241 3' -52.3 NC_005263.2 + 44417 0.67 0.802935
Target:  5'- gGCGUCGaCGUCgAAGCGGCacaggCGAUGGAa -3'
miRNA:   3'- -CGCAGC-GCGG-UUUGUCGca---GUUGUCU- -5'
24241 3' -52.3 NC_005263.2 + 24143 0.67 0.792989
Target:  5'- uGCGUCGCGguugCGAACGcGCuGUCgAACGGGa -3'
miRNA:   3'- -CGCAGCGCg---GUUUGU-CG-CAG-UUGUCU- -5'
24241 3' -52.3 NC_005263.2 + 44670 0.67 0.792989
Target:  5'- cGCG-CGCGCCGAAgAa-GUCGGCGGc -3'
miRNA:   3'- -CGCaGCGCGGUUUgUcgCAGUUGUCu -5'
24241 3' -52.3 NC_005263.2 + 17314 0.67 0.792989
Target:  5'- aCGUCGcCGCCGAGCAGCagcgCAuGCGcGAg -3'
miRNA:   3'- cGCAGC-GCGGUUUGUCGca--GU-UGU-CU- -5'
24241 3' -52.3 NC_005263.2 + 45105 0.67 0.792989
Target:  5'- aCGUCGCGgCGGAUgcgccggcgAGCGUCuACGGc -3'
miRNA:   3'- cGCAGCGCgGUUUG---------UCGCAGuUGUCu -5'
24241 3' -52.3 NC_005263.2 + 3753 0.67 0.792989
Target:  5'- cGCGUaCGUGCCGuACAaUGUCGACGu- -3'
miRNA:   3'- -CGCA-GCGCGGUuUGUcGCAGUUGUcu -5'
24241 3' -52.3 NC_005263.2 + 7699 0.67 0.782866
Target:  5'- -aGUCG-GCCGcGCGGCGUgugcaccguUAGCAGAu -3'
miRNA:   3'- cgCAGCgCGGUuUGUCGCA---------GUUGUCU- -5'
24241 3' -52.3 NC_005263.2 + 32922 0.67 0.782866
Target:  5'- aCGUCGCGCgGcGGCucGCGUCGaucacuGCGGAa -3'
miRNA:   3'- cGCAGCGCGgU-UUGu-CGCAGU------UGUCU- -5'
24241 3' -52.3 NC_005263.2 + 9730 0.67 0.782866
Target:  5'- uGCGcUCGUucGCCAcAGCAGUGUCGaucGCGGu -3'
miRNA:   3'- -CGC-AGCG--CGGU-UUGUCGCAGU---UGUCu -5'
24241 3' -52.3 NC_005263.2 + 27945 0.67 0.782866
Target:  5'- uCGUCGaugaGCCGGACGGCG-CGGauggccCAGAg -3'
miRNA:   3'- cGCAGCg---CGGUUUGUCGCaGUU------GUCU- -5'
24241 3' -52.3 NC_005263.2 + 21595 0.67 0.782866
Target:  5'- gGCGUCGaCGCC--GC-GCG-CAACAGu -3'
miRNA:   3'- -CGCAGC-GCGGuuUGuCGCaGUUGUCu -5'
24241 3' -52.3 NC_005263.2 + 26105 0.67 0.781844
Target:  5'- cGCGUccugguaCGCGCCGcuCGaaGUCAGCGGGu -3'
miRNA:   3'- -CGCA-------GCGCGGUuuGUcgCAGUUGUCU- -5'
24241 3' -52.3 NC_005263.2 + 17979 0.67 0.772577
Target:  5'- ----aGCGCCAGAgCGGCGU--GCAGAa -3'
miRNA:   3'- cgcagCGCGGUUU-GUCGCAguUGUCU- -5'
24241 3' -52.3 NC_005263.2 + 38455 0.67 0.772577
Target:  5'- gGCGacaUUGCGCUcGACAGCG-CAAgcCAGAu -3'
miRNA:   3'- -CGC---AGCGCGGuUUGUCGCaGUU--GUCU- -5'
24241 3' -52.3 NC_005263.2 + 38922 0.67 0.772577
Target:  5'- gGCGcCGCGCCGAGCucgaCGUCGcGCAu- -3'
miRNA:   3'- -CGCaGCGCGGUUUGuc--GCAGU-UGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.