miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24241 5' -50.8 NC_005263.2 + 34785 0.66 0.879576
Target:  5'- cAGCAUGac--GCAGCUCGCGaugccguACAUc -3'
miRNA:   3'- -UCGUACaacuUGUCGAGCGCgu-----UGUG- -5'
24241 5' -50.8 NC_005263.2 + 17525 0.66 0.879576
Target:  5'- cGCGcUGU---ACAGCgCGCGCAGCGg -3'
miRNA:   3'- uCGU-ACAacuUGUCGaGCGCGUUGUg -5'
24241 5' -50.8 NC_005263.2 + 44790 0.66 0.879576
Target:  5'- cGCAgacGUUGAACA-C-CGCGCGGcCGCg -3'
miRNA:   3'- uCGUa--CAACUUGUcGaGCGCGUU-GUG- -5'
24241 5' -50.8 NC_005263.2 + 34247 0.66 0.879576
Target:  5'- cGCuUGU---GCuGCUCGCGCAGCu- -3'
miRNA:   3'- uCGuACAacuUGuCGAGCGCGUUGug -5'
24241 5' -50.8 NC_005263.2 + 15680 0.66 0.871347
Target:  5'- uGGCGUGccaaGAGCggccggcgAGCUCGCaGCGACuACg -3'
miRNA:   3'- -UCGUACaa--CUUG--------UCGAGCG-CGUUG-UG- -5'
24241 5' -50.8 NC_005263.2 + 3713 0.66 0.871347
Target:  5'- uGGUuUGaUUGAGCGcCUCGCGC-ACGCc -3'
miRNA:   3'- -UCGuAC-AACUUGUcGAGCGCGuUGUG- -5'
24241 5' -50.8 NC_005263.2 + 8823 0.66 0.870508
Target:  5'- cGCAUGUugcaauuucuccuUGAuguagguagGCGGCgCGCGgGGCGCg -3'
miRNA:   3'- uCGUACA-------------ACU---------UGUCGaGCGCgUUGUG- -5'
24241 5' -50.8 NC_005263.2 + 17051 0.66 0.861973
Target:  5'- uGGCGgcgUGAACGgcuucaugaagguGCUCGaGCAGCGCa -3'
miRNA:   3'- -UCGUacaACUUGU-------------CGAGCgCGUUGUG- -5'
24241 5' -50.8 NC_005263.2 + 45136 0.66 0.85406
Target:  5'- cGGCAuuccgcUGacGGGCAucacGCUCGCGCAGCuGCa -3'
miRNA:   3'- -UCGU------ACaaCUUGU----CGAGCGCGUUG-UG- -5'
24241 5' -50.8 NC_005263.2 + 46176 0.66 0.85406
Target:  5'- cGCcgGUgccGGCGcGCUCGUGCAgACGCg -3'
miRNA:   3'- uCGuaCAac-UUGU-CGAGCGCGU-UGUG- -5'
24241 5' -50.8 NC_005263.2 + 36632 0.66 0.84502
Target:  5'- cGCA-GUUuAACAGUgCGCGgCAGCGCg -3'
miRNA:   3'- uCGUaCAAcUUGUCGaGCGC-GUUGUG- -5'
24241 5' -50.8 NC_005263.2 + 13847 0.67 0.835729
Target:  5'- cGCGcgGUacucGGGCAGCUgCGCgaGCAGCACa -3'
miRNA:   3'- uCGUa-CAa---CUUGUCGA-GCG--CGUUGUG- -5'
24241 5' -50.8 NC_005263.2 + 22532 0.67 0.834786
Target:  5'- cAGCGUGacGGGCGGCgcggacgccgacgUCGCGCu-CGCg -3'
miRNA:   3'- -UCGUACaaCUUGUCG-------------AGCGCGuuGUG- -5'
24241 5' -50.8 NC_005263.2 + 21911 0.67 0.826197
Target:  5'- cGCAa---GGGCAGCUCGCaaGCAGCGa -3'
miRNA:   3'- uCGUacaaCUUGUCGAGCG--CGUUGUg -5'
24241 5' -50.8 NC_005263.2 + 18456 0.67 0.826197
Target:  5'- cGCGUGa--AGCAGC-CGCGCGGCu- -3'
miRNA:   3'- uCGUACaacUUGUCGaGCGCGUUGug -5'
24241 5' -50.8 NC_005263.2 + 24952 0.67 0.826197
Target:  5'- cGGCGg--UGcGCGGUUCGCagaucgGCAACACg -3'
miRNA:   3'- -UCGUacaACuUGUCGAGCG------CGUUGUG- -5'
24241 5' -50.8 NC_005263.2 + 3540 0.67 0.816435
Target:  5'- aAGCGg---GAuCAGCgcagugcCGCGCAGCGCg -3'
miRNA:   3'- -UCGUacaaCUuGUCGa------GCGCGUUGUG- -5'
24241 5' -50.8 NC_005263.2 + 12818 0.67 0.816435
Target:  5'- cGGCGacuuccaGAucgucCAGUUCGCGCAGCGCa -3'
miRNA:   3'- -UCGUacaa---CUu----GUCGAGCGCGUUGUG- -5'
24241 5' -50.8 NC_005263.2 + 43031 0.67 0.816435
Target:  5'- cGCAucUGUUGAcGCuGUUUgGCGCGACGCc -3'
miRNA:   3'- uCGU--ACAACU-UGuCGAG-CGCGUUGUG- -5'
24241 5' -50.8 NC_005263.2 + 14840 0.67 0.816435
Target:  5'- cAGCcUGgaguuucaccUGAAgGGCUgGCGCAACAUc -3'
miRNA:   3'- -UCGuACa---------ACUUgUCGAgCGCGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.