miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24242 5' -59.2 NC_005263.2 + 35551 0.66 0.496901
Target:  5'- gGGCgGGCGcuACGGCgCcgccGGCcgccgcgaacGUGAAUGCg -3'
miRNA:   3'- -CCGgCCGU--UGCCG-Ga---CCG----------CGCUUACG- -5'
24242 5' -59.2 NC_005263.2 + 44183 0.66 0.496901
Target:  5'- uGCCGGU--CGGCCUGcCGCcauUGCc -3'
miRNA:   3'- cCGGCCGuuGCCGGACcGCGcuuACG- -5'
24242 5' -59.2 NC_005263.2 + 33282 0.66 0.496901
Target:  5'- uGGUCGGCGAUGuaccagcagguGCCgcuguccgaauuUGGCGCGAucuucccGCg -3'
miRNA:   3'- -CCGGCCGUUGC-----------CGG------------ACCGCGCUua-----CG- -5'
24242 5' -59.2 NC_005263.2 + 32882 0.66 0.496901
Target:  5'- cGGCgGGCGGCgaguuucguGGCgUcGGCGuCGGcgGCc -3'
miRNA:   3'- -CCGgCCGUUG---------CCGgA-CCGC-GCUuaCG- -5'
24242 5' -59.2 NC_005263.2 + 13754 0.66 0.496901
Target:  5'- uGCCGGUuuacACGGCgacaGGCGCGuc-GCu -3'
miRNA:   3'- cCGGCCGu---UGCCGga--CCGCGCuuaCG- -5'
24242 5' -59.2 NC_005263.2 + 12079 0.66 0.496901
Target:  5'- gGGCgCGaGUAccuugucgucGCGGCCUGGCauGCGcaGcgGCg -3'
miRNA:   3'- -CCG-GC-CGU----------UGCCGGACCG--CGC--UuaCG- -5'
24242 5' -59.2 NC_005263.2 + 20826 0.66 0.496901
Target:  5'- aGGCgCGGCu-CGGCCUcGCGCagucggGCc -3'
miRNA:   3'- -CCG-GCCGuuGCCGGAcCGCGcuua--CG- -5'
24242 5' -59.2 NC_005263.2 + 33952 0.66 0.495886
Target:  5'- cGCCGGCccgaagucgccaaGGCGGCCgcgcUGGcCGCuGcgGCu -3'
miRNA:   3'- cCGGCCG-------------UUGCCGG----ACC-GCGcUuaCG- -5'
24242 5' -59.2 NC_005263.2 + 47768 0.66 0.486796
Target:  5'- uGGCUGGCGcuuguCGcGCuCUGGCaGUGcGGUGCc -3'
miRNA:   3'- -CCGGCCGUu----GC-CG-GACCG-CGC-UUACG- -5'
24242 5' -59.2 NC_005263.2 + 34702 0.66 0.486796
Target:  5'- cGCCGGCcgUGGUCUgcaaaccauugGGCGUGGcgaGCa -3'
miRNA:   3'- cCGGCCGuuGCCGGA-----------CCGCGCUua-CG- -5'
24242 5' -59.2 NC_005263.2 + 1639 0.66 0.486796
Target:  5'- cGUCGGCGGCGuagcCCUGGaUGCGc-UGCg -3'
miRNA:   3'- cCGGCCGUUGCc---GGACC-GCGCuuACG- -5'
24242 5' -59.2 NC_005263.2 + 27454 0.66 0.486796
Target:  5'- cGGCC-GCGACGaGC--GGCGCGGccacUGCg -3'
miRNA:   3'- -CCGGcCGUUGC-CGgaCCGCGCUu---ACG- -5'
24242 5' -59.2 NC_005263.2 + 43513 0.66 0.486796
Target:  5'- uGCCGGC-GCGGCCguucaUGGaaaaGaCGAuUGCc -3'
miRNA:   3'- cCGGCCGuUGCCGG-----ACCg---C-GCUuACG- -5'
24242 5' -59.2 NC_005263.2 + 8258 0.66 0.486796
Target:  5'- aGCCGGgUaugcgcguucgGACGGCCacaGCGCGAGcgGCg -3'
miRNA:   3'- cCGGCC-G-----------UUGCCGGac-CGCGCUUa-CG- -5'
24242 5' -59.2 NC_005263.2 + 7362 0.66 0.484786
Target:  5'- cGCCGGUGAcgaucgcggcgauCGGgUUGGUguucuuugcggucGCGAGUGCg -3'
miRNA:   3'- cCGGCCGUU-------------GCCgGACCG-------------CGCUUACG- -5'
24242 5' -59.2 NC_005263.2 + 44779 0.66 0.483783
Target:  5'- cGCCGGCGGCGcGCagacguugaacaccGCGCGGccGCg -3'
miRNA:   3'- cCGGCCGUUGC-CGgac-----------CGCGCUuaCG- -5'
24242 5' -59.2 NC_005263.2 + 41671 0.66 0.476789
Target:  5'- uGG-CGGCAGaucGUCgGGCGCGGAcUGCg -3'
miRNA:   3'- -CCgGCCGUUgc-CGGaCCGCGCUU-ACG- -5'
24242 5' -59.2 NC_005263.2 + 17753 0.66 0.476789
Target:  5'- cGCCGGCGgcagcGCGGCC--GCGCucg-GCa -3'
miRNA:   3'- cCGGCCGU-----UGCCGGacCGCGcuuaCG- -5'
24242 5' -59.2 NC_005263.2 + 33084 0.66 0.476789
Target:  5'- uGGUCGGCGAaugaucuGCUUGcGCGCGuucgGCg -3'
miRNA:   3'- -CCGGCCGUUgc-----CGGAC-CGCGCuua-CG- -5'
24242 5' -59.2 NC_005263.2 + 16628 0.66 0.476789
Target:  5'- cGCCGcUGACgGGCCaGGCGcCGAAcuUGCa -3'
miRNA:   3'- cCGGCcGUUG-CCGGaCCGC-GCUU--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.