miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24243 5' -51.5 NC_005263.2 + 8262 0.66 0.891945
Target:  5'- gGGUAUGCgcgUUCGGACGgccacAGCGCGAGc -3'
miRNA:   3'- -CCAUGCG---GGGCUUGCaa---UCGUGUUCa -5'
24243 5' -51.5 NC_005263.2 + 38368 0.66 0.891945
Target:  5'- -aUGCGCCUCGAagGCGUgccGCcCGAGg -3'
miRNA:   3'- ccAUGCGGGGCU--UGCAau-CGuGUUCa -5'
24243 5' -51.5 NC_005263.2 + 649 0.66 0.876533
Target:  5'- --gACGCCCgUGAACGUgaaaCGCAAGg -3'
miRNA:   3'- ccaUGCGGG-GCUUGCAauc-GUGUUCa -5'
24243 5' -51.5 NC_005263.2 + 46555 0.66 0.871698
Target:  5'- cGUGCGCaacaCGAACGUgcucggcaucgaacGGCACAAGc -3'
miRNA:   3'- cCAUGCGgg--GCUUGCAa-------------UCGUGUUCa -5'
24243 5' -51.5 NC_005263.2 + 36704 0.66 0.860047
Target:  5'- aGGagcCGCgCCCGAaccACGUgcGCGCAGGc -3'
miRNA:   3'- -CCau-GCG-GGGCU---UGCAauCGUGUUCa -5'
24243 5' -51.5 NC_005263.2 + 41359 0.66 0.860047
Target:  5'- cGGcGCGCgaUGGACGUgacGCGCGAGUg -3'
miRNA:   3'- -CCaUGCGggGCUUGCAau-CGUGUUCA- -5'
24243 5' -51.5 NC_005263.2 + 47404 0.67 0.804798
Target:  5'- --gGCGCUCgCGGGCGgcGGCACGAu- -3'
miRNA:   3'- ccaUGCGGG-GCUUGCaaUCGUGUUca -5'
24243 5' -51.5 NC_005263.2 + 38360 0.67 0.801834
Target:  5'- cGGUGCGCaCCgCGAucgacacugcugugGCGaacgAGCGCAAGc -3'
miRNA:   3'- -CCAUGCG-GG-GCU--------------UGCaa--UCGUGUUCa -5'
24243 5' -51.5 NC_005263.2 + 34931 0.68 0.794851
Target:  5'- aGGUACGCaCUCG-GCGUUAGUGCc--- -3'
miRNA:   3'- -CCAUGCG-GGGCuUGCAAUCGUGuuca -5'
24243 5' -51.5 NC_005263.2 + 6044 0.68 0.794851
Target:  5'- --cACGCCCCGuuCGUUGGCGg---- -3'
miRNA:   3'- ccaUGCGGGGCuuGCAAUCGUguuca -5'
24243 5' -51.5 NC_005263.2 + 31152 0.68 0.774426
Target:  5'- cGGUACGCCuuGc-CGUgucGGCGCAGa- -3'
miRNA:   3'- -CCAUGCGGggCuuGCAa--UCGUGUUca -5'
24243 5' -51.5 NC_005263.2 + 19624 0.68 0.763972
Target:  5'- --aACGCCUCGuacGCGUugaUGGCugAAGUg -3'
miRNA:   3'- ccaUGCGGGGCu--UGCA---AUCGugUUCA- -5'
24243 5' -51.5 NC_005263.2 + 42400 0.68 0.753373
Target:  5'- aGGUcCGCCCCGAAUucauuuCACAAGUc -3'
miRNA:   3'- -CCAuGCGGGGCUUGcaauc-GUGUUCA- -5'
24243 5' -51.5 NC_005263.2 + 1759 0.69 0.742644
Target:  5'- --aACGCCCCGAuauCGg-GGCGuCAAGUa -3'
miRNA:   3'- ccaUGCGGGGCUu--GCaaUCGU-GUUCA- -5'
24243 5' -51.5 NC_005263.2 + 17919 0.69 0.742644
Target:  5'- cGGcGCGCCCCGGgcuccaACGUcaaagUGGCGCGu-- -3'
miRNA:   3'- -CCaUGCGGGGCU------UGCA-----AUCGUGUuca -5'
24243 5' -51.5 NC_005263.2 + 14993 0.69 0.709789
Target:  5'- cGGUugGCCuuccaucuuccgCCGAACGc--GCGCAAGc -3'
miRNA:   3'- -CCAugCGG------------GGCUUGCaauCGUGUUCa -5'
24243 5' -51.5 NC_005263.2 + 6171 0.7 0.653569
Target:  5'- cGUGCGCCuuGAGCGgc-GCGCGu-- -3'
miRNA:   3'- cCAUGCGGggCUUGCaauCGUGUuca -5'
24243 5' -51.5 NC_005263.2 + 6569 0.7 0.653569
Target:  5'- --gGCGCgCCGcGCGUUugcgcaGGCGCAAGUa -3'
miRNA:   3'- ccaUGCGgGGCuUGCAA------UCGUGUUCA- -5'
24243 5' -51.5 NC_005263.2 + 31975 0.71 0.63085
Target:  5'- aGGUGCGCaccgcaaccugCCCGGACugUGGCGgGAGUg -3'
miRNA:   3'- -CCAUGCG-----------GGGCUUGcaAUCGUgUUCA- -5'
24243 5' -51.5 NC_005263.2 + 11592 0.72 0.574254
Target:  5'- aGGUcGCGCCCCGcGAUGaagUGGCGCAGc- -3'
miRNA:   3'- -CCA-UGCGGGGC-UUGCa--AUCGUGUUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.