Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24244 | 3' | -57.4 | NC_005263.2 | + | 18335 | 0.68 | 0.43383 |
Target: 5'- cGCCGAcggcacgcugcUGAACcCGCAgaACCCGgcgcaCCUGCAg -3' miRNA: 3'- -UGGCU-----------ACUUGcGCGU--UGGGC-----GGACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 42886 | 0.68 | 0.443547 |
Target: 5'- aGCCGAguauccgGAAUuCGCGacgguaggacGCCgCGCCUGCAg -3' miRNA: 3'- -UGGCUa------CUUGcGCGU----------UGG-GCGGACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 30475 | 0.68 | 0.43383 |
Target: 5'- cGCCGAcgGAACgcaucgauGCGCGACCCGCgccaCUGgAa -3' miRNA: 3'- -UGGCUa-CUUG--------CGCGUUGGGCG----GACgU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 46913 | 0.68 | 0.443547 |
Target: 5'- cGCCGGaaGAACGCGCuGCCgCGCa-GCAc -3' miRNA: 3'- -UGGCUa-CUUGCGCGuUGG-GCGgaCGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 23495 | 0.68 | 0.39624 |
Target: 5'- cUCGGUGAAuugaccUGCGCcGCcaCCGCCUGCGc -3' miRNA: 3'- uGGCUACUU------GCGCGuUG--GGCGGACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 27040 | 0.68 | 0.39624 |
Target: 5'- uUCGAgcaGGAUGCGCGgccGCCCGUCggGCAg -3' miRNA: 3'- uGGCUa--CUUGCGCGU---UGGGCGGa-CGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 2844 | 0.68 | 0.40544 |
Target: 5'- cACCGuucGAAUGCGggcCGGCCCGCCcGCc -3' miRNA: 3'- -UGGCua-CUUGCGC---GUUGGGCGGaCGu -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 26136 | 0.68 | 0.424238 |
Target: 5'- gGCaGAucUGcGCGCGCAGCauGCCUGCGu -3' miRNA: 3'- -UGgCU--ACuUGCGCGUUGggCGGACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 41507 | 0.68 | 0.432865 |
Target: 5'- cGCCGccGAACGCGaucgcguCGACUacuugCGCCUGCGc -3' miRNA: 3'- -UGGCuaCUUGCGC-------GUUGG-----GCGGACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 27278 | 0.68 | 0.443547 |
Target: 5'- cCCGAcu-GCGCGaggccgAGCCgCGCCUGCAg -3' miRNA: 3'- uGGCUacuUGCGCg-----UUGG-GCGGACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 9175 | 0.67 | 0.492837 |
Target: 5'- aGCCGAUGcGCgacgucgagcucgGCGCGgcGCCCGgCUUGCu -3' miRNA: 3'- -UGGCUACuUG-------------CGCGU--UGGGC-GGACGu -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 790 | 0.67 | 0.463341 |
Target: 5'- uUCGAccuUGAGCGUGCcGgCCGCCgGCGc -3' miRNA: 3'- uGGCU---ACUUGCGCGuUgGGCGGaCGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 26881 | 0.67 | 0.449436 |
Target: 5'- cGCCGGUGAcggcugcgACGCGCucgaaacgcacccACUCGCCcGCGc -3' miRNA: 3'- -UGGCUACU--------UGCGCGu------------UGGGCGGaCGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 9835 | 0.67 | 0.453385 |
Target: 5'- cGuuGAcGAACgGCGCGGCgCGCUUGCu -3' miRNA: 3'- -UggCUaCUUG-CGCGUUGgGCGGACGu -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 27737 | 0.67 | 0.49387 |
Target: 5'- -aCGGUGucgGCGCGCGAUCaGCCaUGCGc -3' miRNA: 3'- ugGCUACu--UGCGCGUUGGgCGG-ACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 34032 | 0.67 | 0.453385 |
Target: 5'- aGCCGAcaUGGGCcgGCGCGGCgCGCUcaaUGCGc -3' miRNA: 3'- -UGGCU--ACUUG--CGCGUUGgGCGG---ACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 29229 | 0.67 | 0.483588 |
Target: 5'- uGCCGuc-GGCGCGCAgcgGCgCGCCgagGCAc -3' miRNA: 3'- -UGGCuacUUGCGCGU---UGgGCGGa--CGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 26252 | 0.67 | 0.504251 |
Target: 5'- gGCCGucgcGAACGCgGCGACCUgaucaGCCUGa- -3' miRNA: 3'- -UGGCua--CUUGCG-CGUUGGG-----CGGACgu -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 10011 | 0.67 | 0.483588 |
Target: 5'- cGCCaGGUGcGgGCGCAGCaCCGCC-GCc -3' miRNA: 3'- -UGG-CUACuUgCGCGUUG-GGCGGaCGu -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 36522 | 0.67 | 0.463341 |
Target: 5'- cAUCGcgGG--GCGCGACCUgaaagGCCUGCAa -3' miRNA: 3'- -UGGCuaCUugCGCGUUGGG-----CGGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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