Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24244 | 3' | -57.4 | NC_005263.2 | + | 6462 | 0.66 | 0.557428 |
Target: 5'- aGCaCGAgcGAGCGCGUGGgCCGCagUGCAa -3' miRNA: 3'- -UG-GCUa-CUUGCGCGUUgGGCGg-ACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 31526 | 0.66 | 0.514724 |
Target: 5'- cCCGgcGAACGCGUcgccGCCgGCCUugGCGu -3' miRNA: 3'- uGGCuaCUUGCGCGu---UGGgCGGA--CGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 23893 | 0.66 | 0.535928 |
Target: 5'- -gCG-UGAGCGCGCucgugagcgcGCCCGCgaGCGu -3' miRNA: 3'- ugGCuACUUGCGCGu---------UGGGCGgaCGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 45698 | 0.66 | 0.557428 |
Target: 5'- aGCgGAUGugucgcggcgaAGCGUGguGCCCcgGCCUGCc -3' miRNA: 3'- -UGgCUAC-----------UUGCGCguUGGG--CGGACGu -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 15214 | 0.66 | 0.557428 |
Target: 5'- cGCCGAcGccGACGCcacgaaacucGCcGCCCGCCgGCAc -3' miRNA: 3'- -UGGCUaC--UUGCG----------CGuUGGGCGGaCGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 23303 | 0.66 | 0.557428 |
Target: 5'- gGCCGAau-ACGCGCcGCCgaCGCCcgGCGa -3' miRNA: 3'- -UGGCUacuUGCGCGuUGG--GCGGa-CGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 12555 | 0.66 | 0.568272 |
Target: 5'- gGCCGgcG-GCGcCGUAgcGCCCGCCcGCGc -3' miRNA: 3'- -UGGCuaCuUGC-GCGU--UGGGCGGaCGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 46485 | 0.66 | 0.546644 |
Target: 5'- cGCCGAc-GACGCGUucGACCCGgaUGCGg -3' miRNA: 3'- -UGGCUacUUGCGCG--UUGGGCggACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 48054 | 0.66 | 0.514724 |
Target: 5'- cACCuGGUacGAAgGCGC-GCCCGaCCUGCc -3' miRNA: 3'- -UGG-CUA--CUUgCGCGuUGGGC-GGACGu -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 30851 | 0.66 | 0.546644 |
Target: 5'- cGCCGAUGuuccGACGCgGCuggAACaCCGCgaGCAu -3' miRNA: 3'- -UGGCUAC----UUGCG-CG---UUG-GGCGgaCGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 35978 | 0.66 | 0.546644 |
Target: 5'- gACCGccugGAGCGCGCGuaauggcgcGCgCGCCgcUGCGc -3' miRNA: 3'- -UGGCua--CUUGCGCGU---------UGgGCGG--ACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 9442 | 0.66 | 0.540206 |
Target: 5'- gGCCGAUcaagacgggcaccacGGGCagcgGCGC-GCCCGgCUGCAg -3' miRNA: 3'- -UGGCUA---------------CUUG----CGCGuUGGGCgGACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 30333 | 0.66 | 0.53486 |
Target: 5'- gAUCGAUugcGAAuCGCGCGACuuGCCgaucaggucgucgUGCAg -3' miRNA: 3'- -UGGCUA---CUU-GCGCGUUGggCGG-------------ACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 29558 | 0.66 | 0.529533 |
Target: 5'- uGCCGGgcugcgcgaacuucuUGAACGCGCucgcggugucGACgCCGCCgaucGCGa -3' miRNA: 3'- -UGGCU---------------ACUUGCGCG----------UUG-GGCGGa---CGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 23800 | 0.66 | 0.518939 |
Target: 5'- cGCCGAUGcGACGCGCGcgaGCcaaucgcucggguuuCCGCCUuccaccauGCAa -3' miRNA: 3'- -UGGCUAC-UUGCGCGU---UG---------------GGCGGA--------CGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 8803 | 0.66 | 0.568272 |
Target: 5'- -gCGAUcGcGCGCGCAugcGCCUGCCgGCc -3' miRNA: 3'- ugGCUA-CuUGCGCGU---UGGGCGGaCGu -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 23152 | 0.66 | 0.568272 |
Target: 5'- uGCCGAUcugcGAAcCGCGCA--CCGCCgUGCc -3' miRNA: 3'- -UGGCUA----CUU-GCGCGUugGGCGG-ACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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