miRNA display CGI


Results 61 - 77 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24244 3' -57.4 NC_005263.2 + 38132 0.73 0.201162
Target:  5'- aACCGGacgGcgUGCGCAGCCCGCaggGCAg -3'
miRNA:   3'- -UGGCUa--CuuGCGCGUUGGGCGga-CGU- -5'
24244 3' -57.4 NC_005263.2 + 38328 0.7 0.311942
Target:  5'- gAUCGAUGcGCGCGCGACCgUGCaCgcgGCGa -3'
miRNA:   3'- -UGGCUACuUGCGCGUUGG-GCG-Ga--CGU- -5'
24244 3' -57.4 NC_005263.2 + 39394 0.71 0.296807
Target:  5'- uACgCGAUGGACGCGgcCGACCUGUCgccGCAc -3'
miRNA:   3'- -UG-GCUACUUGCGC--GUUGGGCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 39708 0.77 0.116015
Target:  5'- cGCCGAggcGGCGCGCuuccuggucGGCCUGCCUGCGc -3'
miRNA:   3'- -UGGCUac-UUGCGCG---------UUGGGCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 39848 0.78 0.10071
Target:  5'- gGCCGuccGAACGCGCAuACCCGgCUGCc -3'
miRNA:   3'- -UGGCua-CUUGCGCGU-UGGGCgGACGu -5'
24244 3' -57.4 NC_005263.2 + 41507 0.68 0.432865
Target:  5'- cGCCGccGAACGCGaucgcguCGACUacuugCGCCUGCGc -3'
miRNA:   3'- -UGGCuaCUUGCGC-------GUUGG-----GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 42232 0.69 0.352309
Target:  5'- aACUGcaugGGAUGCGCAucgACCgCGCUUGCAg -3'
miRNA:   3'- -UGGCua--CUUGCGCGU---UGG-GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 42886 0.68 0.443547
Target:  5'- aGCCGAguauccgGAAUuCGCGacgguaggacGCCgCGCCUGCAg -3'
miRNA:   3'- -UGGCUa------CUUGcGCGU----------UGG-GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 44779 0.69 0.366852
Target:  5'- cGCCGGcggcgcgcagacguUGAAcacCGCGCGGCCgCGCCcagGCAa -3'
miRNA:   3'- -UGGCU--------------ACUU---GCGCGUUGG-GCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 45419 0.69 0.364256
Target:  5'- uGCCGAgcGGcCGCGCGAUCagcuaccacaacgcaCGCCUGCAc -3'
miRNA:   3'- -UGGCUa-CUuGCGCGUUGG---------------GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 45479 0.74 0.190653
Target:  5'- aGCgCGAUGAAcCGCGCggUCgGCCUGUc -3'
miRNA:   3'- -UG-GCUACUU-GCGCGuuGGgCGGACGu -5'
24244 3' -57.4 NC_005263.2 + 45698 0.66 0.557428
Target:  5'- aGCgGAUGugucgcggcgaAGCGUGguGCCCcgGCCUGCc -3'
miRNA:   3'- -UGgCUAC-----------UUGCGCguUGGG--CGGACGu -5'
24244 3' -57.4 NC_005263.2 + 45850 0.69 0.360814
Target:  5'- gGCCGA---GCGCGCGGCgCGCUacgGCAa -3'
miRNA:   3'- -UGGCUacuUGCGCGUUGgGCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 46485 0.66 0.546644
Target:  5'- cGCCGAc-GACGCGUucGACCCGgaUGCGg -3'
miRNA:   3'- -UGGCUacUUGCGCG--UUGGGCggACGU- -5'
24244 3' -57.4 NC_005263.2 + 46913 0.68 0.443547
Target:  5'- cGCCGGaaGAACGCGCuGCCgCGCa-GCAc -3'
miRNA:   3'- -UGGCUa-CUUGCGCGuUGG-GCGgaCGU- -5'
24244 3' -57.4 NC_005263.2 + 47191 0.7 0.343947
Target:  5'- uUCGAUGcgucGACGaGUAACCCGCCgGCGg -3'
miRNA:   3'- uGGCUAC----UUGCgCGUUGGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 48054 0.66 0.514724
Target:  5'- cACCuGGUacGAAgGCGC-GCCCGaCCUGCc -3'
miRNA:   3'- -UGG-CUA--CUUgCGCGuUGGGC-GGACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.