miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24244 3' -57.4 NC_005263.2 + 34032 0.67 0.453385
Target:  5'- aGCCGAcaUGGGCcgGCGCGGCgCGCUcaaUGCGc -3'
miRNA:   3'- -UGGCU--ACUUG--CGCGUUGgGCGG---ACGU- -5'
24244 3' -57.4 NC_005263.2 + 31526 0.66 0.514724
Target:  5'- cCCGgcGAACGCGUcgccGCCgGCCUugGCGu -3'
miRNA:   3'- uGGCuaCUUGCGCGu---UGGgCGGA--CGU- -5'
24244 3' -57.4 NC_005263.2 + 30851 0.66 0.546644
Target:  5'- cGCCGAUGuuccGACGCgGCuggAACaCCGCgaGCAu -3'
miRNA:   3'- -UGGCUAC----UUGCG-CG---UUG-GGCGgaCGU- -5'
24244 3' -57.4 NC_005263.2 + 30712 0.71 0.268263
Target:  5'- cCCGccaGGCGCGCGGCCgCGCCgGCAg -3'
miRNA:   3'- uGGCuacUUGCGCGUUGG-GCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 30475 0.68 0.43383
Target:  5'- cGCCGAcgGAACgcaucgauGCGCGACCCGCgccaCUGgAa -3'
miRNA:   3'- -UGGCUa-CUUG--------CGCGUUGGGCG----GACgU- -5'
24244 3' -57.4 NC_005263.2 + 30333 0.66 0.53486
Target:  5'- gAUCGAUugcGAAuCGCGCGACuuGCCgaucaggucgucgUGCAg -3'
miRNA:   3'- -UGGCUA---CUU-GCGCGUUGggCGG-------------ACGU- -5'
24244 3' -57.4 NC_005263.2 + 29819 0.71 0.260811
Target:  5'- -gCGAUGcAGCGCGCAcgacgagcgcaucGCCCggaacGCCUGCGa -3'
miRNA:   3'- ugGCUAC-UUGCGCGU-------------UGGG-----CGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 29558 0.66 0.529533
Target:  5'- uGCCGGgcugcgcgaacuucuUGAACGCGCucgcggugucGACgCCGCCgaucGCGa -3'
miRNA:   3'- -UGGCU---------------ACUUGCGCG----------UUG-GGCGGa---CGU- -5'
24244 3' -57.4 NC_005263.2 + 29229 0.67 0.483588
Target:  5'- uGCCGuc-GGCGCGCAgcgGCgCGCCgagGCAc -3'
miRNA:   3'- -UGGCuacUUGCGCGU---UGgGCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 27964 0.69 0.387175
Target:  5'- cGCgGAUGGcccagagcugcuGCGCGCGAgCguaCGCCUGCGc -3'
miRNA:   3'- -UGgCUACU------------UGCGCGUUgG---GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 27737 0.67 0.49387
Target:  5'- -aCGGUGucgGCGCGCGAUCaGCCaUGCGc -3'
miRNA:   3'- ugGCUACu--UGCGCGUUGGgCGG-ACGU- -5'
24244 3' -57.4 NC_005263.2 + 27520 0.69 0.352309
Target:  5'- aGCCGGU---CGCGguGCCCGUCgGCAc -3'
miRNA:   3'- -UGGCUAcuuGCGCguUGGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 27369 0.74 0.171074
Target:  5'- uGCCGAcGAguagGCGCGCuucguugccgacGGCCCGgCCUGCAg -3'
miRNA:   3'- -UGGCUaCU----UGCGCG------------UUGGGC-GGACGU- -5'
24244 3' -57.4 NC_005263.2 + 27278 0.68 0.443547
Target:  5'- cCCGAcu-GCGCGaggccgAGCCgCGCCUGCAg -3'
miRNA:   3'- uGGCUacuUGCGCg-----UUGG-GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 27040 0.68 0.39624
Target:  5'- uUCGAgcaGGAUGCGCGgccGCCCGUCggGCAg -3'
miRNA:   3'- uGGCUa--CUUGCGCGU---UGGGCGGa-CGU- -5'
24244 3' -57.4 NC_005263.2 + 26881 0.67 0.449436
Target:  5'- cGCCGGUGAcggcugcgACGCGCucgaaacgcacccACUCGCCcGCGc -3'
miRNA:   3'- -UGGCUACU--------UGCGCGu------------UGGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 26252 0.67 0.504251
Target:  5'- gGCCGucgcGAACGCgGCGACCUgaucaGCCUGa- -3'
miRNA:   3'- -UGGCua--CUUGCG-CGUUGGG-----CGGACgu -5'
24244 3' -57.4 NC_005263.2 + 26136 0.68 0.424238
Target:  5'- gGCaGAucUGcGCGCGCAGCauGCCUGCGu -3'
miRNA:   3'- -UGgCU--ACuUGCGCGUUGggCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 24162 0.7 0.311942
Target:  5'- cACCGucacgcucacGAACGCGCAAgCCGCCaaaGCGa -3'
miRNA:   3'- -UGGCua--------CUUGCGCGUUgGGCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 24135 0.72 0.238844
Target:  5'- cGCCGAUuugcgucgcgguugcGAACGCGCugucgaacgggaauuGCCCGCCgaGCAu -3'
miRNA:   3'- -UGGCUA---------------CUUGCGCGu--------------UGGGCGGa-CGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.