miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24244 3' -57.4 NC_005263.2 + 23548 0.69 0.378249
Target:  5'- uGCCGAccGugGCGCAGCcgccgCCGCCcGCGc -3'
miRNA:   3'- -UGGCUacUugCGCGUUG-----GGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 17165 0.73 0.206604
Target:  5'- gGCCGAgaagccGAAUGCGCAGCUCGCg-GCGu -3'
miRNA:   3'- -UGGCUa-----CUUGCGCGUUGGGCGgaCGU- -5'
24244 3' -57.4 NC_005263.2 + 23893 0.66 0.535928
Target:  5'- -gCG-UGAGCGCGCucgugagcgcGCCCGCgaGCGu -3'
miRNA:   3'- ugGCuACUUGCGCGu---------UGGGCGgaCGU- -5'
24244 3' -57.4 NC_005263.2 + 790 0.67 0.463341
Target:  5'- uUCGAccuUGAGCGUGCcGgCCGCCgGCGc -3'
miRNA:   3'- uGGCU---ACUUGCGCGuUgGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 45419 0.69 0.364256
Target:  5'- uGCCGAgcGGcCGCGCGAUCagcuaccacaacgcaCGCCUGCAc -3'
miRNA:   3'- -UGGCUa-CUuGCGCGUUGG---------------GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 22757 0.73 0.201162
Target:  5'- cGCCGAgGAACGCgaugGCGACCUGCCcgagGCu -3'
miRNA:   3'- -UGGCUaCUUGCG----CGUUGGGCGGa---CGu -5'
24244 3' -57.4 NC_005263.2 + 46913 0.68 0.443547
Target:  5'- cGCCGGaaGAACGCGCuGCCgCGCa-GCAc -3'
miRNA:   3'- -UGGCUa-CUUGCGCGuUGG-GCGgaCGU- -5'
24244 3' -57.4 NC_005263.2 + 18122 0.74 0.180628
Target:  5'- gGCCGAguucuacgcgcUGAuCGCGCuGCCCGCCgcUGCGc -3'
miRNA:   3'- -UGGCU-----------ACUuGCGCGuUGGGCGG--ACGU- -5'
24244 3' -57.4 NC_005263.2 + 27369 0.74 0.171074
Target:  5'- uGCCGAcGAguagGCGCGCuucguugccgacGGCCCGgCCUGCAg -3'
miRNA:   3'- -UGGCUaCU----UGCGCG------------UUGGGC-GGACGU- -5'
24244 3' -57.4 NC_005263.2 + 23378 0.7 0.311942
Target:  5'- cCCGGUGAuCGuCGUAuugCCGCCUGCGc -3'
miRNA:   3'- uGGCUACUuGC-GCGUug-GGCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 44779 0.69 0.366852
Target:  5'- cGCCGGcggcgcgcagacguUGAAcacCGCGCGGCCgCGCCcagGCAa -3'
miRNA:   3'- -UGGCU--------------ACUU---GCGCGUUGG-GCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 23495 0.68 0.39624
Target:  5'- cUCGGUGAAuugaccUGCGCcGCcaCCGCCUGCGc -3'
miRNA:   3'- uGGCUACUU------GCGCGuUG--GGCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 45850 0.69 0.360814
Target:  5'- gGCCGA---GCGCGCGGCgCGCUacgGCAa -3'
miRNA:   3'- -UGGCUacuUGCGCGUUGgGCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 38328 0.7 0.311942
Target:  5'- gAUCGAUGcGCGCGCGACCgUGCaCgcgGCGa -3'
miRNA:   3'- -UGGCUACuUGCGCGUUGG-GCG-Ga--CGU- -5'
24244 3' -57.4 NC_005263.2 + 30712 0.71 0.268263
Target:  5'- cCCGccaGGCGCGCGGCCgCGCCgGCAg -3'
miRNA:   3'- uGGCuacUUGCGCGUUGG-GCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 24135 0.72 0.238844
Target:  5'- cGCCGAUuugcgucgcgguugcGAACGCGCugucgaacgggaauuGCCCGCCgaGCAu -3'
miRNA:   3'- -UGGCUA---------------CUUGCGCGu--------------UGGGCGGa-CGU- -5'
24244 3' -57.4 NC_005263.2 + 12555 0.66 0.568272
Target:  5'- gGCCGgcG-GCGcCGUAgcGCCCGCCcGCGc -3'
miRNA:   3'- -UGGCuaCuUGC-GCGU--UGGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 45698 0.66 0.557428
Target:  5'- aGCgGAUGugucgcggcgaAGCGUGguGCCCcgGCCUGCc -3'
miRNA:   3'- -UGgCUAC-----------UUGCGCguUGGG--CGGACGu -5'
24244 3' -57.4 NC_005263.2 + 27737 0.67 0.49387
Target:  5'- -aCGGUGucgGCGCGCGAUCaGCCaUGCGc -3'
miRNA:   3'- ugGCUACu--UGCGCGUUGGgCGG-ACGU- -5'
24244 3' -57.4 NC_005263.2 + 10011 0.67 0.483588
Target:  5'- cGCCaGGUGcGgGCGCAGCaCCGCC-GCc -3'
miRNA:   3'- -UGG-CUACuUgCGCGUUG-GGCGGaCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.