miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24244 3' -57.4 NC_005263.2 + 36522 0.67 0.463341
Target:  5'- cAUCGcgGG--GCGCGACCUgaaagGCCUGCAa -3'
miRNA:   3'- -UGGCuaCUugCGCGUUGGG-----CGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 46485 0.66 0.546644
Target:  5'- cGCCGAc-GACGCGUucGACCCGgaUGCGg -3'
miRNA:   3'- -UGGCUacUUGCGCG--UUGGGCggACGU- -5'
24244 3' -57.4 NC_005263.2 + 30333 0.66 0.53486
Target:  5'- gAUCGAUugcGAAuCGCGCGACuuGCCgaucaggucgucgUGCAg -3'
miRNA:   3'- -UGGCUA---CUU-GCGCGUUGggCGG-------------ACGU- -5'
24244 3' -57.4 NC_005263.2 + 48054 0.66 0.514724
Target:  5'- cACCuGGUacGAAgGCGC-GCCCGaCCUGCc -3'
miRNA:   3'- -UGG-CUA--CUUgCGCGuUGGGC-GGACGu -5'
24244 3' -57.4 NC_005263.2 + 9442 0.66 0.540206
Target:  5'- gGCCGAUcaagacgggcaccacGGGCagcgGCGC-GCCCGgCUGCAg -3'
miRNA:   3'- -UGGCUA---------------CUUG----CGCGuUGGGCgGACGU- -5'
24244 3' -57.4 NC_005263.2 + 21785 0.71 0.289456
Target:  5'- aACCGAccuucACGC-CGACCgGCCUGCAg -3'
miRNA:   3'- -UGGCUacu--UGCGcGUUGGgCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 34032 0.67 0.453385
Target:  5'- aGCCGAcaUGGGCcgGCGCGGCgCGCUcaaUGCGc -3'
miRNA:   3'- -UGGCU--ACUUG--CGCGUUGgGCGG---ACGU- -5'
24244 3' -57.4 NC_005263.2 + 9835 0.67 0.453385
Target:  5'- cGuuGAcGAACgGCGCGGCgCGCUUGCu -3'
miRNA:   3'- -UggCUaCUUG-CGCGUUGgGCGGACGu -5'
24244 3' -57.4 NC_005263.2 + 26881 0.67 0.449436
Target:  5'- cGCCGGUGAcggcugcgACGCGCucgaaacgcacccACUCGCCcGCGc -3'
miRNA:   3'- -UGGCUACU--------UGCGCGu------------UGGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 7203 0.71 0.296807
Target:  5'- uACCGAgu--CGCGCGACCauCGCCgGCGa -3'
miRNA:   3'- -UGGCUacuuGCGCGUUGG--GCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 399 0.7 0.311942
Target:  5'- uGCCGAUGAucaGCGUgccgaGCAGCuuGCC-GCAc -3'
miRNA:   3'- -UGGCUACU---UGCG-----CGUUGggCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 24162 0.7 0.311942
Target:  5'- cACCGucacgcucacGAACGCGCAAgCCGCCaaaGCGa -3'
miRNA:   3'- -UGGCua--------CUUGCGCGUUgGGCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 15557 0.7 0.319726
Target:  5'- -gCGAguaAGCGCGUGGCCgGCCUGCc -3'
miRNA:   3'- ugGCUac-UUGCGCGUUGGgCGGACGu -5'
24244 3' -57.4 NC_005263.2 + 8865 0.7 0.319726
Target:  5'- gGCCGAcgGGAUaCGCGGCCCGUgCUGCc -3'
miRNA:   3'- -UGGCUa-CUUGcGCGUUGGGCG-GACGu -5'
24244 3' -57.4 NC_005263.2 + 42232 0.69 0.352309
Target:  5'- aACUGcaugGGAUGCGCAucgACCgCGCUUGCAg -3'
miRNA:   3'- -UGGCua--CUUGCGCGU---UGG-GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 27520 0.69 0.352309
Target:  5'- aGCCGGU---CGCGguGCCCGUCgGCAc -3'
miRNA:   3'- -UGGCUAcuuGCGCguUGGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 2709 0.69 0.360814
Target:  5'- gGCaGGUGcAUGCGCAGCgCGCgUGCAu -3'
miRNA:   3'- -UGgCUACuUGCGCGUUGgGCGgACGU- -5'
24244 3' -57.4 NC_005263.2 + 27964 0.69 0.387175
Target:  5'- cGCgGAUGGcccagagcugcuGCGCGCGAgCguaCGCCUGCGc -3'
miRNA:   3'- -UGgCUACU------------UGCGCGUUgG---GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 27040 0.68 0.39624
Target:  5'- uUCGAgcaGGAUGCGCGgccGCCCGUCggGCAg -3'
miRNA:   3'- uGGCUa--CUUGCGCGU---UGGGCGGa-CGU- -5'
24244 3' -57.4 NC_005263.2 + 42886 0.68 0.443547
Target:  5'- aGCCGAguauccgGAAUuCGCGacgguaggacGCCgCGCCUGCAg -3'
miRNA:   3'- -UGGCUa------CUUGcGCGU----------UGG-GCGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.