miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24244 3' -57.4 NC_005263.2 + 8803 0.66 0.568272
Target:  5'- -gCGAUcGcGCGCGCAugcGCCUGCCgGCc -3'
miRNA:   3'- ugGCUA-CuUGCGCGU---UGGGCGGaCGu -5'
24244 3' -57.4 NC_005263.2 + 6462 0.66 0.557428
Target:  5'- aGCaCGAgcGAGCGCGUGGgCCGCagUGCAa -3'
miRNA:   3'- -UG-GCUa-CUUGCGCGUUgGGCGg-ACGU- -5'
24244 3' -57.4 NC_005263.2 + 46485 0.66 0.546644
Target:  5'- cGCCGAc-GACGCGUucGACCCGgaUGCGg -3'
miRNA:   3'- -UGGCUacUUGCGCG--UUGGGCggACGU- -5'
24244 3' -57.4 NC_005263.2 + 30851 0.66 0.546644
Target:  5'- cGCCGAUGuuccGACGCgGCuggAACaCCGCgaGCAu -3'
miRNA:   3'- -UGGCUAC----UUGCG-CG---UUG-GGCGgaCGU- -5'
24244 3' -57.4 NC_005263.2 + 35978 0.66 0.546644
Target:  5'- gACCGccugGAGCGCGCGuaauggcgcGCgCGCCgcUGCGc -3'
miRNA:   3'- -UGGCua--CUUGCGCGU---------UGgGCGG--ACGU- -5'
24244 3' -57.4 NC_005263.2 + 9442 0.66 0.540206
Target:  5'- gGCCGAUcaagacgggcaccacGGGCagcgGCGC-GCCCGgCUGCAg -3'
miRNA:   3'- -UGGCUA---------------CUUG----CGCGuUGGGCgGACGU- -5'
24244 3' -57.4 NC_005263.2 + 30333 0.66 0.53486
Target:  5'- gAUCGAUugcGAAuCGCGCGACuuGCCgaucaggucgucgUGCAg -3'
miRNA:   3'- -UGGCUA---CUU-GCGCGUUGggCGG-------------ACGU- -5'
24244 3' -57.4 NC_005263.2 + 29558 0.66 0.529533
Target:  5'- uGCCGGgcugcgcgaacuucuUGAACGCGCucgcggugucGACgCCGCCgaucGCGa -3'
miRNA:   3'- -UGGCU---------------ACUUGCGCG----------UUG-GGCGGa---CGU- -5'
24244 3' -57.4 NC_005263.2 + 23800 0.66 0.518939
Target:  5'- cGCCGAUGcGACGCGCGcgaGCcaaucgcucggguuuCCGCCUuccaccauGCAa -3'
miRNA:   3'- -UGGCUAC-UUGCGCGU---UG---------------GGCGGA--------CGU- -5'
24244 3' -57.4 NC_005263.2 + 48054 0.66 0.514724
Target:  5'- cACCuGGUacGAAgGCGC-GCCCGaCCUGCc -3'
miRNA:   3'- -UGG-CUA--CUUgCGCGuUGGGC-GGACGu -5'
24244 3' -57.4 NC_005263.2 + 41507 0.68 0.432865
Target:  5'- cGCCGccGAACGCGaucgcguCGACUacuugCGCCUGCGc -3'
miRNA:   3'- -UGGCuaCUUGCGC-------GUUGG-----GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 27278 0.68 0.443547
Target:  5'- cCCGAcu-GCGCGaggccgAGCCgCGCCUGCAg -3'
miRNA:   3'- uGGCUacuUGCGCg-----UUGG-GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 42886 0.68 0.443547
Target:  5'- aGCCGAguauccgGAAUuCGCGacgguaggacGCCgCGCCUGCAg -3'
miRNA:   3'- -UGGCUa------CUUGcGCGU----------UGG-GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 26881 0.67 0.449436
Target:  5'- cGCCGGUGAcggcugcgACGCGCucgaaacgcacccACUCGCCcGCGc -3'
miRNA:   3'- -UGGCUACU--------UGCGCGu------------UGGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 9835 0.67 0.453385
Target:  5'- cGuuGAcGAACgGCGCGGCgCGCUUGCu -3'
miRNA:   3'- -UggCUaCUUG-CGCGUUGgGCGGACGu -5'
24244 3' -57.4 NC_005263.2 + 34032 0.67 0.453385
Target:  5'- aGCCGAcaUGGGCcgGCGCGGCgCGCUcaaUGCGc -3'
miRNA:   3'- -UGGCU--ACUUG--CGCGUUGgGCGG---ACGU- -5'
24244 3' -57.4 NC_005263.2 + 36522 0.67 0.463341
Target:  5'- cAUCGcgGG--GCGCGACCUgaaagGCCUGCAa -3'
miRNA:   3'- -UGGCuaCUugCGCGUUGGG-----CGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 23152 0.66 0.568272
Target:  5'- uGCCGAUcugcGAAcCGCGCA--CCGCCgUGCc -3'
miRNA:   3'- -UGGCUA----CUU-GCGCGUugGGCGG-ACGu -5'
24244 3' -57.4 NC_005263.2 + 39848 0.78 0.10071
Target:  5'- gGCCGuccGAACGCGCAuACCCGgCUGCc -3'
miRNA:   3'- -UGGCua-CUUGCGCGU-UGGGCgGACGu -5'
24244 3' -57.4 NC_005263.2 + 39708 0.77 0.116015
Target:  5'- cGCCGAggcGGCGCGCuuccuggucGGCCUGCCUGCGc -3'
miRNA:   3'- -UGGCUac-UUGCGCG---------UUGGGCGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.