Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24244 | 3' | -57.4 | NC_005263.2 | + | 22757 | 0.73 | 0.201162 |
Target: 5'- cGCCGAgGAACGCgaugGCGACCUGCCcgagGCu -3' miRNA: 3'- -UGGCUaCUUGCG----CGUUGGGCGGa---CGu -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 18122 | 0.74 | 0.180628 |
Target: 5'- gGCCGAguucuacgcgcUGAuCGCGCuGCCCGCCgcUGCGc -3' miRNA: 3'- -UGGCU-----------ACUuGCGCGuUGGGCGG--ACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 27369 | 0.74 | 0.171074 |
Target: 5'- uGCCGAcGAguagGCGCGCuucguugccgacGGCCCGgCCUGCAg -3' miRNA: 3'- -UGGCUaCU----UGCGCG------------UUGGGC-GGACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 3200 | 0.76 | 0.128351 |
Target: 5'- gGCCGGUGAgccggcccgGCGCGCcGCCCGCCccgaugacgccggGCAg -3' miRNA: 3'- -UGGCUACU---------UGCGCGuUGGGCGGa------------CGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 39708 | 0.77 | 0.116015 |
Target: 5'- cGCCGAggcGGCGCGCuuccuggucGGCCUGCCUGCGc -3' miRNA: 3'- -UGGCUac-UUGCGCG---------UUGGGCGGACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 39848 | 0.78 | 0.10071 |
Target: 5'- gGCCGuccGAACGCGCAuACCCGgCUGCc -3' miRNA: 3'- -UGGCua-CUUGCGCGU-UGGGCgGACGu -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 37683 | 0.72 | 0.241346 |
Target: 5'- cGCCGGaucaggcguucguUGAACGCGCGccggACCCGCUcGCc -3' miRNA: 3'- -UGGCU-------------ACUUGCGCGU----UGGGCGGaCGu -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 689 | 0.72 | 0.254841 |
Target: 5'- uGCuCGGUGAGCGCGauCGugCCGCCgcccGCGa -3' miRNA: 3'- -UG-GCUACUUGCGC--GUugGGCGGa---CGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 45850 | 0.69 | 0.360814 |
Target: 5'- gGCCGA---GCGCGCGGCgCGCUacgGCAa -3' miRNA: 3'- -UGGCUacuUGCGCGUUGgGCGGa--CGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 47191 | 0.7 | 0.343947 |
Target: 5'- uUCGAUGcgucGACGaGUAACCCGCCgGCGg -3' miRNA: 3'- uGGCUAC----UUGCgCGUUGGGCGGaCGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 14178 | 0.7 | 0.327656 |
Target: 5'- gGCCGGUG--UGCGCGAgCUGCgUGCGc -3' miRNA: 3'- -UGGCUACuuGCGCGUUgGGCGgACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 38328 | 0.7 | 0.311942 |
Target: 5'- gAUCGAUGcGCGCGCGACCgUGCaCgcgGCGa -3' miRNA: 3'- -UGGCUACuUGCGCGUUGG-GCG-Ga--CGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 23378 | 0.7 | 0.311942 |
Target: 5'- cCCGGUGAuCGuCGUAuugCCGCCUGCGc -3' miRNA: 3'- uGGCUACUuGC-GCGUug-GGCGGACGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 20723 | 0.71 | 0.296807 |
Target: 5'- aGCCGGUcAGCGCGCcGgCCGCCgccGCGc -3' miRNA: 3'- -UGGCUAcUUGCGCGuUgGGCGGa--CGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 7038 | 0.71 | 0.296807 |
Target: 5'- cGCCGAcgGAugGCGCAuCgCGCCaaugGCAg -3' miRNA: 3'- -UGGCUa-CUugCGCGUuGgGCGGa---CGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 30712 | 0.71 | 0.268263 |
Target: 5'- cCCGccaGGCGCGCGGCCgCGCCgGCAg -3' miRNA: 3'- uGGCuacUUGCGCGUUGG-GCGGaCGU- -5' |
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24244 | 3' | -57.4 | NC_005263.2 | + | 5836 | 1.08 | 0.000612 |
Target: 5'- uACCGAUGAACGCGCAACCCGCCUGCAu -3' miRNA: 3'- -UGGCUACUUGCGCGUUGGGCGGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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