miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24244 3' -57.4 NC_005263.2 + 10011 0.67 0.483588
Target:  5'- cGCCaGGUGcGgGCGCAGCaCCGCC-GCc -3'
miRNA:   3'- -UGG-CUACuUgCGCGUUG-GGCGGaCGu -5'
24244 3' -57.4 NC_005263.2 + 29229 0.67 0.483588
Target:  5'- uGCCGuc-GGCGCGCAgcgGCgCGCCgagGCAc -3'
miRNA:   3'- -UGGCuacUUGCGCGU---UGgGCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 790 0.67 0.463341
Target:  5'- uUCGAccuUGAGCGUGCcGgCCGCCgGCGc -3'
miRNA:   3'- uGGCU---ACUUGCGCGuUgGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 36522 0.67 0.463341
Target:  5'- cAUCGcgGG--GCGCGACCUgaaagGCCUGCAa -3'
miRNA:   3'- -UGGCuaCUugCGCGUUGGG-----CGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 9835 0.67 0.453385
Target:  5'- cGuuGAcGAACgGCGCGGCgCGCUUGCu -3'
miRNA:   3'- -UggCUaCUUG-CGCGUUGgGCGGACGu -5'
24244 3' -57.4 NC_005263.2 + 34032 0.67 0.453385
Target:  5'- aGCCGAcaUGGGCcgGCGCGGCgCGCUcaaUGCGc -3'
miRNA:   3'- -UGGCU--ACUUG--CGCGUUGgGCGG---ACGU- -5'
24244 3' -57.4 NC_005263.2 + 26881 0.67 0.449436
Target:  5'- cGCCGGUGAcggcugcgACGCGCucgaaacgcacccACUCGCCcGCGc -3'
miRNA:   3'- -UGGCUACU--------UGCGCGu------------UGGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 27278 0.68 0.443547
Target:  5'- cCCGAcu-GCGCGaggccgAGCCgCGCCUGCAg -3'
miRNA:   3'- uGGCUacuUGCGCg-----UUGG-GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 42886 0.68 0.443547
Target:  5'- aGCCGAguauccgGAAUuCGCGacgguaggacGCCgCGCCUGCAg -3'
miRNA:   3'- -UGGCUa------CUUGcGCGU----------UGG-GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 46913 0.68 0.443547
Target:  5'- cGCCGGaaGAACGCGCuGCCgCGCa-GCAc -3'
miRNA:   3'- -UGGCUa-CUUGCGCGuUGG-GCGgaCGU- -5'
24244 3' -57.4 NC_005263.2 + 18335 0.68 0.43383
Target:  5'- cGCCGAcggcacgcugcUGAACcCGCAgaACCCGgcgcaCCUGCAg -3'
miRNA:   3'- -UGGCU-----------ACUUGcGCGU--UGGGC-----GGACGU- -5'
24244 3' -57.4 NC_005263.2 + 30475 0.68 0.43383
Target:  5'- cGCCGAcgGAACgcaucgauGCGCGACCCGCgccaCUGgAa -3'
miRNA:   3'- -UGGCUa-CUUG--------CGCGUUGGGCG----GACgU- -5'
24244 3' -57.4 NC_005263.2 + 41507 0.68 0.432865
Target:  5'- cGCCGccGAACGCGaucgcguCGACUacuugCGCCUGCGc -3'
miRNA:   3'- -UGGCuaCUUGCGC-------GUUGG-----GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 26136 0.68 0.424238
Target:  5'- gGCaGAucUGcGCGCGCAGCauGCCUGCGu -3'
miRNA:   3'- -UGgCU--ACuUGCGCGUUGggCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 2844 0.68 0.40544
Target:  5'- cACCGuucGAAUGCGggcCGGCCCGCCcGCc -3'
miRNA:   3'- -UGGCua-CUUGCGC---GUUGGGCGGaCGu -5'
24244 3' -57.4 NC_005263.2 + 23495 0.68 0.39624
Target:  5'- cUCGGUGAAuugaccUGCGCcGCcaCCGCCUGCGc -3'
miRNA:   3'- uGGCUACUU------GCGCGuUG--GGCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 27040 0.68 0.39624
Target:  5'- uUCGAgcaGGAUGCGCGgccGCCCGUCggGCAg -3'
miRNA:   3'- uGGCUa--CUUGCGCGU---UGGGCGGa-CGU- -5'
24244 3' -57.4 NC_005263.2 + 27964 0.69 0.387175
Target:  5'- cGCgGAUGGcccagagcugcuGCGCGCGAgCguaCGCCUGCGc -3'
miRNA:   3'- -UGgCUACU------------UGCGCGUUgG---GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 23548 0.69 0.378249
Target:  5'- uGCCGAccGugGCGCAGCcgccgCCGCCcGCGc -3'
miRNA:   3'- -UGGCUacUugCGCGUUG-----GGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 10165 0.69 0.378249
Target:  5'- gGCCGGUu-GCGCaccggcugccgGCGGCgCGCCUGCGc -3'
miRNA:   3'- -UGGCUAcuUGCG-----------CGUUGgGCGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.