miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24244 5' -57.8 NC_005263.2 + 6708 0.66 0.535928
Target:  5'- -uUGCGGUCGG-GCGCAUgCUCGaGCGc -3'
miRNA:   3'- ucGCGCCAGCUaCGCGUA-GGGUaCGU- -5'
24244 5' -57.8 NC_005263.2 + 12591 0.66 0.535928
Target:  5'- gGGCGCaGUCGgcGCGCcaguGUCaccgccuucggCCAUGCGc -3'
miRNA:   3'- -UCGCGcCAGCuaCGCG----UAG-----------GGUACGU- -5'
24244 5' -57.8 NC_005263.2 + 26432 0.66 0.525286
Target:  5'- cAG-GCGGUCGAUGCGaAUCUgCA-GCAg -3'
miRNA:   3'- -UCgCGCCAGCUACGCgUAGG-GUaCGU- -5'
24244 5' -57.8 NC_005263.2 + 18272 0.66 0.525286
Target:  5'- aGGCGUuccGGgCGAUGCGC-UCgUCGUGCGc -3'
miRNA:   3'- -UCGCG---CCaGCUACGCGuAG-GGUACGU- -5'
24244 5' -57.8 NC_005263.2 + 28100 0.66 0.514724
Target:  5'- uGGCGCGGcCGAU-CGCGUCgUugacgGCAg -3'
miRNA:   3'- -UCGCGCCaGCUAcGCGUAGgGua---CGU- -5'
24244 5' -57.8 NC_005263.2 + 45168 0.66 0.514724
Target:  5'- cGGCgGCGG-CGAUgGCGCAUUCgCGaGCAu -3'
miRNA:   3'- -UCG-CGCCaGCUA-CGCGUAGG-GUaCGU- -5'
24244 5' -57.8 NC_005263.2 + 36002 0.66 0.504251
Target:  5'- cGCGCGcGcCGcUGCGCAUgCCAggccGCGa -3'
miRNA:   3'- uCGCGC-CaGCuACGCGUAgGGUa---CGU- -5'
24244 5' -57.8 NC_005263.2 + 19031 0.66 0.504251
Target:  5'- uAGCGaCGGcCGAUGCGCGccgCCCcgaggacGCGc -3'
miRNA:   3'- -UCGC-GCCaGCUACGCGUa--GGGua-----CGU- -5'
24244 5' -57.8 NC_005263.2 + 8744 0.66 0.502167
Target:  5'- gAGCGgGGUCGAgacguuuuuaacgcUGCGCGgcaggaugacgccggCCCGcGCGa -3'
miRNA:   3'- -UCGCgCCAGCU--------------ACGCGUa--------------GGGUaCGU- -5'
24244 5' -57.8 NC_005263.2 + 29298 0.66 0.483588
Target:  5'- cGGCGgccgGGUCGGcaUGCGCAUCgCGcGCGg -3'
miRNA:   3'- -UCGCg---CCAGCU--ACGCGUAGgGUaCGU- -5'
24244 5' -57.8 NC_005263.2 + 17622 0.67 0.47341
Target:  5'- uGGCGCGGgucgcgcaUCGAUGCGU-UCCgUcgGCGc -3'
miRNA:   3'- -UCGCGCC--------AGCUACGCGuAGG-GuaCGU- -5'
24244 5' -57.8 NC_005263.2 + 37211 0.67 0.470378
Target:  5'- cAGCGCGG-CGAUacgccgcucacgacGCGCG-CCgGUGCc -3'
miRNA:   3'- -UCGCGCCaGCUA--------------CGCGUaGGgUACGu -5'
24244 5' -57.8 NC_005263.2 + 31394 0.67 0.463341
Target:  5'- cGCGCGGUaGGUGCGCugcagCUgcUGCAg -3'
miRNA:   3'- uCGCGCCAgCUACGCGua---GGguACGU- -5'
24244 5' -57.8 NC_005263.2 + 29049 0.67 0.463341
Target:  5'- cGCGCaGGccgCGcgGCGCGUCCUcgggGCGg -3'
miRNA:   3'- uCGCG-CCa--GCuaCGCGUAGGGua--CGU- -5'
24244 5' -57.8 NC_005263.2 + 9181 0.67 0.453385
Target:  5'- uGCGCGacGUCGAgcucgGCGCGgcgCCCGgcuUGCu -3'
miRNA:   3'- uCGCGC--CAGCUa----CGCGUa--GGGU---ACGu -5'
24244 5' -57.8 NC_005263.2 + 3356 0.67 0.443547
Target:  5'- cGCGCGGUCGA-GCGa--CCagacaGUGCGc -3'
miRNA:   3'- uCGCGCCAGCUaCGCguaGGg----UACGU- -5'
24244 5' -57.8 NC_005263.2 + 10887 0.67 0.424238
Target:  5'- cGGCGCGcGUCGugagcgGCGUAUCgCCGcGCu -3'
miRNA:   3'- -UCGCGC-CAGCua----CGCGUAG-GGUaCGu -5'
24244 5' -57.8 NC_005263.2 + 21201 0.68 0.40544
Target:  5'- cGGCGCGGgCGAguggGUGCGUUUCGaGCGc -3'
miRNA:   3'- -UCGCGCCaGCUa---CGCGUAGGGUaCGU- -5'
24244 5' -57.8 NC_005263.2 + 28727 0.68 0.39624
Target:  5'- cGCGCcGcCGAggcugacggcaaUGCGCAUCCgGUGCu -3'
miRNA:   3'- uCGCGcCaGCU------------ACGCGUAGGgUACGu -5'
24244 5' -57.8 NC_005263.2 + 18802 0.68 0.387175
Target:  5'- cGCGCG--CGAUGCGCAUgCCgacccggccgccGUGCAg -3'
miRNA:   3'- uCGCGCcaGCUACGCGUAgGG------------UACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.