Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24244 | 5' | -57.8 | NC_005263.2 | + | 45168 | 0.66 | 0.514724 |
Target: 5'- cGGCgGCGG-CGAUgGCGCAUUCgCGaGCAu -3' miRNA: 3'- -UCG-CGCCaGCUA-CGCGUAGG-GUaCGU- -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 37452 | 0.74 | 0.171074 |
Target: 5'- cGCGCGGUC--UGCGCGgcgUCCAUGUg -3' miRNA: 3'- uCGCGCCAGcuACGCGUa--GGGUACGu -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 37211 | 0.67 | 0.470378 |
Target: 5'- cAGCGCGG-CGAUacgccgcucacgacGCGCG-CCgGUGCc -3' miRNA: 3'- -UCGCGCCaGCUA--------------CGCGUaGGgUACGu -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 36002 | 0.66 | 0.504251 |
Target: 5'- cGCGCGcGcCGcUGCGCAUgCCAggccGCGa -3' miRNA: 3'- uCGCGC-CaGCuACGCGUAgGGUa---CGU- -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 31394 | 0.67 | 0.463341 |
Target: 5'- cGCGCGGUaGGUGCGCugcagCUgcUGCAg -3' miRNA: 3'- uCGCGCCAgCUACGCGua---GGguACGU- -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 29298 | 0.66 | 0.483588 |
Target: 5'- cGGCGgccgGGUCGGcaUGCGCAUCgCGcGCGg -3' miRNA: 3'- -UCGCg---CCAGCU--ACGCGUAGgGUaCGU- -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 29049 | 0.67 | 0.463341 |
Target: 5'- cGCGCaGGccgCGcgGCGCGUCCUcgggGCGg -3' miRNA: 3'- uCGCG-CCa--GCuaCGCGUAGGGua--CGU- -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 28727 | 0.68 | 0.39624 |
Target: 5'- cGCGCcGcCGAggcugacggcaaUGCGCAUCCgGUGCu -3' miRNA: 3'- uCGCGcCaGCU------------ACGCGUAGGgUACGu -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 28100 | 0.66 | 0.514724 |
Target: 5'- uGGCGCGGcCGAU-CGCGUCgUugacgGCAg -3' miRNA: 3'- -UCGCGCCaGCUAcGCGUAGgGua---CGU- -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 26432 | 0.66 | 0.525286 |
Target: 5'- cAG-GCGGUCGAUGCGaAUCUgCA-GCAg -3' miRNA: 3'- -UCgCGCCAGCUACGCgUAGG-GUaCGU- -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 21201 | 0.68 | 0.40544 |
Target: 5'- cGGCGCGGgCGAguggGUGCGUUUCGaGCGc -3' miRNA: 3'- -UCGCGCCaGCUa---CGCGUAGGGUaCGU- -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 19877 | 0.75 | 0.137238 |
Target: 5'- gAGCGCGG-CGA-GCGCggCCgAUGCAg -3' miRNA: 3'- -UCGCGCCaGCUaCGCGuaGGgUACGU- -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 19031 | 0.66 | 0.504251 |
Target: 5'- uAGCGaCGGcCGAUGCGCGccgCCCcgaggacGCGc -3' miRNA: 3'- -UCGC-GCCaGCUACGCGUa--GGGua-----CGU- -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 18802 | 0.68 | 0.387175 |
Target: 5'- cGCGCG--CGAUGCGCAUgCCgacccggccgccGUGCAg -3' miRNA: 3'- uCGCGCcaGCUACGCGUAgGG------------UACGU- -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 18272 | 0.66 | 0.525286 |
Target: 5'- aGGCGUuccGGgCGAUGCGC-UCgUCGUGCGc -3' miRNA: 3'- -UCGCG---CCaGCUACGCGuAG-GGUACGU- -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 17622 | 0.67 | 0.47341 |
Target: 5'- uGGCGCGGgucgcgcaUCGAUGCGU-UCCgUcgGCGc -3' miRNA: 3'- -UCGCGCC--------AGCUACGCGuAGG-GuaCGU- -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 12591 | 0.66 | 0.535928 |
Target: 5'- gGGCGCaGUCGgcGCGCcaguGUCaccgccuucggCCAUGCGc -3' miRNA: 3'- -UCGCGcCAGCuaCGCG----UAG-----------GGUACGU- -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 10887 | 0.67 | 0.424238 |
Target: 5'- cGGCGCGcGUCGugagcgGCGUAUCgCCGcGCu -3' miRNA: 3'- -UCGCGC-CAGCua----CGCGUAG-GGUaCGu -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 9181 | 0.67 | 0.453385 |
Target: 5'- uGCGCGacGUCGAgcucgGCGCGgcgCCCGgcuUGCu -3' miRNA: 3'- uCGCGC--CAGCUa----CGCGUa--GGGU---ACGu -5' |
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24244 | 5' | -57.8 | NC_005263.2 | + | 8744 | 0.66 | 0.502167 |
Target: 5'- gAGCGgGGUCGAgacguuuuuaacgcUGCGCGgcaggaugacgccggCCCGcGCGa -3' miRNA: 3'- -UCGCgCCAGCU--------------ACGCGUa--------------GGGUaCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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