miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 3' -50.9 NC_005263.2 + 24700 0.66 0.92311
Target:  5'- gGCGGCgcGCCGAACGUgccGGGcGGCGcaggCGg -3'
miRNA:   3'- -CGUCG--UGGCUUGCG---CCUaUUGCaa--GC- -5'
24245 3' -50.9 NC_005263.2 + 40068 0.66 0.92311
Target:  5'- cGCGGCGCCacGGCGCGGA---CGccUCGc -3'
miRNA:   3'- -CGUCGUGGc-UUGCGCCUauuGCa-AGC- -5'
24245 3' -50.9 NC_005263.2 + 22637 0.66 0.92311
Target:  5'- aCAGCcCCGAgGCGUGGcAUAGC-UUCGc -3'
miRNA:   3'- cGUCGuGGCU-UGCGCC-UAUUGcAAGC- -5'
24245 3' -50.9 NC_005263.2 + 21241 0.66 0.919411
Target:  5'- --cGCAUCGAcgGCGCGGugcgcgccacguauuGccUGACGUUCGa -3'
miRNA:   3'- cguCGUGGCU--UGCGCC---------------U--AUUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 43940 0.66 0.916887
Target:  5'- uGCAGCA-CGAGCGCGGc--GCGc--- -3'
miRNA:   3'- -CGUCGUgGCUUGCGCCuauUGCaagc -5'
24245 3' -50.9 NC_005263.2 + 30344 0.66 0.916887
Target:  5'- aGCGcGUGCCGAGCGCGGcc-GCGc--- -3'
miRNA:   3'- -CGU-CGUGGCUUGCGCCuauUGCaagc -5'
24245 3' -50.9 NC_005263.2 + 24148 0.66 0.916887
Target:  5'- cGCGGUugCGAACGCGcugucgAACGg--- -3'
miRNA:   3'- -CGUCGugGCUUGCGCcua---UUGCaagc -5'
24245 3' -50.9 NC_005263.2 + 34271 0.66 0.914963
Target:  5'- gGCAGCACCGcuaaauguAACuGUGGcUGcaccagccgacaguGCGUUCGa -3'
miRNA:   3'- -CGUCGUGGC--------UUG-CGCCuAU--------------UGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 3682 0.66 0.910372
Target:  5'- aCAGUGCCGGccguCGCGucauACGUUCGa -3'
miRNA:   3'- cGUCGUGGCUu---GCGCcuauUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 30133 0.66 0.903568
Target:  5'- uGCA-CGCCGcucuGGCGCuGGAUGcCGUUCa -3'
miRNA:   3'- -CGUcGUGGC----UUGCG-CCUAUuGCAAGc -5'
24245 3' -50.9 NC_005263.2 + 1532 0.66 0.903568
Target:  5'- aGCAGCuuguGCCGuucGAUGCcGAgcACGUUCGu -3'
miRNA:   3'- -CGUCG----UGGC---UUGCGcCUauUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 32523 0.66 0.903568
Target:  5'- cCAGCACguCGAACGCGGcgAcUG-UCGg -3'
miRNA:   3'- cGUCGUG--GCUUGCGCCuaUuGCaAGC- -5'
24245 3' -50.9 NC_005263.2 + 40253 0.66 0.896478
Target:  5'- -gGGCACCugGGGCGCGG-UGAucuuccgccCGUUCGc -3'
miRNA:   3'- cgUCGUGG--CUUGCGCCuAUU---------GCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 12451 0.66 0.896478
Target:  5'- aGCAGCACCuugucgcccGCGCGGAacACGa--- -3'
miRNA:   3'- -CGUCGUGGcu-------UGCGCCUauUGCaagc -5'
24245 3' -50.9 NC_005263.2 + 15565 0.66 0.896478
Target:  5'- cGCGcGCGCUGAACGCcGaAUGACGguagcgCGg -3'
miRNA:   3'- -CGU-CGUGGCUUGCGcC-UAUUGCaa----GC- -5'
24245 3' -50.9 NC_005263.2 + 20898 0.66 0.896478
Target:  5'- -aGGCGCaCGGgaugACGcCGGAUGGCGUguaCGg -3'
miRNA:   3'- cgUCGUG-GCU----UGC-GCCUAUUGCAa--GC- -5'
24245 3' -50.9 NC_005263.2 + 9170 0.66 0.895753
Target:  5'- gGCcGUGCCGAucagcgcgaagcgACGCGGGUGcgcaaACGggCGg -3'
miRNA:   3'- -CGuCGUGGCU-------------UGCGCCUAU-----UGCaaGC- -5'
24245 3' -50.9 NC_005263.2 + 15354 0.66 0.886838
Target:  5'- cGCGGCGCUGAacgucguacugcgcACGCugucGGGUAGCGa--- -3'
miRNA:   3'- -CGUCGUGGCU--------------UGCG----CCUAUUGCaagc -5'
24245 3' -50.9 NC_005263.2 + 8181 0.67 0.881454
Target:  5'- uGCAGCACCugGAACaGCGuGAcgacuuCGUUCa -3'
miRNA:   3'- -CGUCGUGG--CUUG-CGC-CUauu---GCAAGc -5'
24245 3' -50.9 NC_005263.2 + 3146 0.67 0.881454
Target:  5'- uCAGCACCGAcgagcACGUGGccgGGC-UUCGu -3'
miRNA:   3'- cGUCGUGGCU-----UGCGCCua-UUGcAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.