miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 3' -50.9 NC_005263.2 + 6008 1.13 0.001483
Target:  5'- cGCAGCACCGAACGCGGAUAACGUUCGg -3'
miRNA:   3'- -CGUCGUGGCUUGCGCCUAUUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 30301 0.8 0.230882
Target:  5'- aCAGCGCCGGGCGCGGccGGCGUcUUGa -3'
miRNA:   3'- cGUCGUGGCUUGCGCCuaUUGCA-AGC- -5'
24245 3' -50.9 NC_005263.2 + 12508 0.79 0.250183
Target:  5'- uGC-GCGCCGGcuucGCGCGGGUuGGCGUUCGc -3'
miRNA:   3'- -CGuCGUGGCU----UGCGCCUA-UUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 47932 0.79 0.250183
Target:  5'- gGCAGCGggcucgccCCGGGCGCGGAUcGCGUgcUCGc -3'
miRNA:   3'- -CGUCGU--------GGCUUGCGCCUAuUGCA--AGC- -5'
24245 3' -50.9 NC_005263.2 + 21178 0.74 0.473439
Target:  5'- aCGGgGCCGGACGCGGAc-GCGcgCGg -3'
miRNA:   3'- cGUCgUGGCUUGCGCCUauUGCaaGC- -5'
24245 3' -50.9 NC_005263.2 + 33426 0.74 0.49447
Target:  5'- -gAGCGCCGcGCGCGcGUAGCGgUCGg -3'
miRNA:   3'- cgUCGUGGCuUGCGCcUAUUGCaAGC- -5'
24245 3' -50.9 NC_005263.2 + 840 0.74 0.515916
Target:  5'- cGCAcGUcacuACCGAGCGCGGAcAGCGUacccgUCGu -3'
miRNA:   3'- -CGU-CG----UGGCUUGCGCCUaUUGCA-----AGC- -5'
24245 3' -50.9 NC_005263.2 + 17331 0.73 0.537727
Target:  5'- cCGGCGCCGGugGCuuc-GACGUUCGg -3'
miRNA:   3'- cGUCGUGGCUugCGccuaUUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 13952 0.73 0.548752
Target:  5'- -gAGCGCauaGGACGCGGcgcGCGUUCGc -3'
miRNA:   3'- cgUCGUGg--CUUGCGCCuauUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 32643 0.73 0.556512
Target:  5'- aGCAGCgGCCGAaagccuuccggaugGCGCGGGUcGGCGgcgaugUCGa -3'
miRNA:   3'- -CGUCG-UGGCU--------------UGCGCCUA-UUGCa-----AGC- -5'
24245 3' -50.9 NC_005263.2 + 13626 0.72 0.604753
Target:  5'- uGCGcGCgGCCGAACGCcugaucauGGAUGACGgUCGu -3'
miRNA:   3'- -CGU-CG-UGGCUUGCG--------CCUAUUGCaAGC- -5'
24245 3' -50.9 NC_005263.2 + 44774 0.72 0.604753
Target:  5'- cGCGGCGCCGGcgGCGCGca-GACGUUg- -3'
miRNA:   3'- -CGUCGUGGCU--UGCGCcuaUUGCAAgc -5'
24245 3' -50.9 NC_005263.2 + 17821 0.72 0.604753
Target:  5'- cCGGCGCUGu-CGCGGAc-ACGUUCGc -3'
miRNA:   3'- cGUCGUGGCuuGCGCCUauUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 14978 0.72 0.616066
Target:  5'- gGCGGCAgCGAucuGCGCG--UGACGUUCu -3'
miRNA:   3'- -CGUCGUgGCU---UGCGCcuAUUGCAAGc -5'
24245 3' -50.9 NC_005263.2 + 5910 0.72 0.616066
Target:  5'- aCAGCGCCcGGCGCGGcguGCGUaCGg -3'
miRNA:   3'- cGUCGUGGcUUGCGCCuauUGCAaGC- -5'
24245 3' -50.9 NC_005263.2 + 41672 0.71 0.650051
Target:  5'- gGCGGCAgaucgUCGGGCGCGGAcuGCGgcCGu -3'
miRNA:   3'- -CGUCGU-----GGCUUGCGCCUauUGCaaGC- -5'
24245 3' -50.9 NC_005263.2 + 26200 0.71 0.650051
Target:  5'- cGCGGCgGCCGcgcGAUGCGGcgGcCGUUCGc -3'
miRNA:   3'- -CGUCG-UGGC---UUGCGCCuaUuGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 20270 0.71 0.661359
Target:  5'- aGCGGCGCCGAauucaACGCGugccgcgaaGGUGACGccgCGa -3'
miRNA:   3'- -CGUCGUGGCU-----UGCGC---------CUAUUGCaa-GC- -5'
24245 3' -50.9 NC_005263.2 + 3347 0.71 0.683878
Target:  5'- cCGGCGCCGcGCGCGGucgAGCGa--- -3'
miRNA:   3'- cGUCGUGGCuUGCGCCua-UUGCaagc -5'
24245 3' -50.9 NC_005263.2 + 29755 0.7 0.728187
Target:  5'- aGguGCGCCGggUucuGCGGGUucagcAGCGUgccgUCGg -3'
miRNA:   3'- -CguCGUGGCuuG---CGCCUA-----UUGCA----AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.