miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 3' -50.9 NC_005263.2 + 771 0.68 0.820723
Target:  5'- cGCAGCGCgauguaCGAcUGCGGGUcGACG-UCGg -3'
miRNA:   3'- -CGUCGUG------GCUuGCGCCUA-UUGCaAGC- -5'
24245 3' -50.9 NC_005263.2 + 840 0.74 0.515916
Target:  5'- cGCAcGUcacuACCGAGCGCGGAcAGCGUacccgUCGu -3'
miRNA:   3'- -CGU-CG----UGGCUUGCGCCUaUUGCA-----AGC- -5'
24245 3' -50.9 NC_005263.2 + 1532 0.66 0.903568
Target:  5'- aGCAGCuuguGCCGuucGAUGCcGAgcACGUUCGu -3'
miRNA:   3'- -CGUCG----UGGC---UUGCGcCUauUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 2382 0.67 0.856901
Target:  5'- uCAGCACCGAGCGgcaggcCGGGgcaccACGcUUCGc -3'
miRNA:   3'- cGUCGUGGCUUGC------GCCUau---UGC-AAGC- -5'
24245 3' -50.9 NC_005263.2 + 3146 0.67 0.881454
Target:  5'- uCAGCACCGAcgagcACGUGGccgGGC-UUCGu -3'
miRNA:   3'- cGUCGUGGCU-----UGCGCCua-UUGcAAGC- -5'
24245 3' -50.9 NC_005263.2 + 3347 0.71 0.683878
Target:  5'- cCGGCGCCGcGCGCGGucgAGCGa--- -3'
miRNA:   3'- cGUCGUGGCuUGCGCCua-UUGCaagc -5'
24245 3' -50.9 NC_005263.2 + 3682 0.66 0.910372
Target:  5'- aCAGUGCCGGccguCGCGucauACGUUCGa -3'
miRNA:   3'- cGUCGUGGCUu---GCGCcuauUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 5910 0.72 0.616066
Target:  5'- aCAGCGCCcGGCGCGGcguGCGUaCGg -3'
miRNA:   3'- cGUCGUGGcUUGCGCCuauUGCAaGC- -5'
24245 3' -50.9 NC_005263.2 + 6008 1.13 0.001483
Target:  5'- cGCAGCACCGAACGCGGAUAACGUUCGg -3'
miRNA:   3'- -CGUCGUGGCUUGCGCCUAUUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 8181 0.67 0.881454
Target:  5'- uGCAGCACCugGAACaGCGuGAcgacuuCGUUCa -3'
miRNA:   3'- -CGUCGUGG--CUUG-CGC-CUauu---GCAAGc -5'
24245 3' -50.9 NC_005263.2 + 9170 0.66 0.895753
Target:  5'- gGCcGUGCCGAucagcgcgaagcgACGCGGGUGcgcaaACGggCGg -3'
miRNA:   3'- -CGuCGUGGCU-------------UGCGCCUAU-----UGCaaGC- -5'
24245 3' -50.9 NC_005263.2 + 11894 0.68 0.839273
Target:  5'- cGCGGCGCCGGGCGCcugcgcgcUGGCGUc-- -3'
miRNA:   3'- -CGUCGUGGCUUGCGccu-----AUUGCAagc -5'
24245 3' -50.9 NC_005263.2 + 12451 0.66 0.896478
Target:  5'- aGCAGCACCuugucgcccGCGCGGAacACGa--- -3'
miRNA:   3'- -CGUCGUGGcu-------UGCGCCUauUGCaagc -5'
24245 3' -50.9 NC_005263.2 + 12508 0.79 0.250183
Target:  5'- uGC-GCGCCGGcuucGCGCGGGUuGGCGUUCGc -3'
miRNA:   3'- -CGuCGUGGCU----UGCGCCUA-UUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 13626 0.72 0.604753
Target:  5'- uGCGcGCgGCCGAACGCcugaucauGGAUGACGgUCGu -3'
miRNA:   3'- -CGU-CG-UGGCUUGCG--------CCUAUUGCaAGC- -5'
24245 3' -50.9 NC_005263.2 + 13952 0.73 0.548752
Target:  5'- -gAGCGCauaGGACGCGGcgcGCGUUCGc -3'
miRNA:   3'- cgUCGUGg--CUUGCGCCuauUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 14137 0.67 0.856901
Target:  5'- cGCAGCgGCC-AGCGCGGccgccuUGGCGacUUCGg -3'
miRNA:   3'- -CGUCG-UGGcUUGCGCCu-----AUUGC--AAGC- -5'
24245 3' -50.9 NC_005263.2 + 14978 0.72 0.616066
Target:  5'- gGCGGCAgCGAucuGCGCG--UGACGUUCu -3'
miRNA:   3'- -CGUCGUgGCU---UGCGCcuAUUGCAAGc -5'
24245 3' -50.9 NC_005263.2 + 15354 0.66 0.886838
Target:  5'- cGCGGCGCUGAacgucguacugcgcACGCugucGGGUAGCGa--- -3'
miRNA:   3'- -CGUCGUGGCU--------------UGCG----CCUAUUGCaagc -5'
24245 3' -50.9 NC_005263.2 + 15565 0.66 0.896478
Target:  5'- cGCGcGCGCUGAACGCcGaAUGACGguagcgCGg -3'
miRNA:   3'- -CGU-CGUGGCUUGCGcC-UAUUGCaa----GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.