miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 3' -50.9 NC_005263.2 + 42853 0.67 0.865345
Target:  5'- cCGGCACCGccCGCuGAUGACGg--- -3'
miRNA:   3'- cGUCGUGGCuuGCGcCUAUUGCaagc -5'
24245 3' -50.9 NC_005263.2 + 3682 0.66 0.910372
Target:  5'- aCAGUGCCGGccguCGCGucauACGUUCGa -3'
miRNA:   3'- cGUCGUGGCUu---GCGCcuauUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 30621 0.67 0.856901
Target:  5'- --cGCGCCGcGCGCGaucagGGCGUUCa -3'
miRNA:   3'- cguCGUGGCuUGCGCcua--UUGCAAGc -5'
24245 3' -50.9 NC_005263.2 + 15600 0.68 0.811127
Target:  5'- cGguGCACgagcgauaCGAACGCGGcgAA-GUUCGu -3'
miRNA:   3'- -CguCGUG--------GCUUGCGCCuaUUgCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 32523 0.66 0.903568
Target:  5'- cCAGCACguCGAACGCGGcgAcUG-UCGg -3'
miRNA:   3'- cGUCGUG--GCUUGCGCCuaUuGCaAGC- -5'
24245 3' -50.9 NC_005263.2 + 15565 0.66 0.896478
Target:  5'- cGCGcGCGCUGAACGCcGaAUGACGguagcgCGg -3'
miRNA:   3'- -CGU-CGUGGCUUGCGcC-UAUUGCaa----GC- -5'
24245 3' -50.9 NC_005263.2 + 34271 0.66 0.914963
Target:  5'- gGCAGCACCGcuaaauguAACuGUGGcUGcaccagccgacaguGCGUUCGa -3'
miRNA:   3'- -CGUCGUGGC--------UUG-CGCCuAU--------------UGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 22637 0.66 0.92311
Target:  5'- aCAGCcCCGAgGCGUGGcAUAGC-UUCGc -3'
miRNA:   3'- cGUCGuGGCU-UGCGCC-UAUUGcAAGC- -5'
24245 3' -50.9 NC_005263.2 + 42645 0.69 0.770869
Target:  5'- aGCAGCGCCGA-CGUGGcaacCGaUCGc -3'
miRNA:   3'- -CGUCGUGGCUuGCGCCuauuGCaAGC- -5'
24245 3' -50.9 NC_005263.2 + 41672 0.71 0.650051
Target:  5'- gGCGGCAgaucgUCGGGCGCGGAcuGCGgcCGu -3'
miRNA:   3'- -CGUCGU-----GGCUUGCGCCUauUGCaaGC- -5'
24245 3' -50.9 NC_005263.2 + 33162 0.68 0.830108
Target:  5'- cGCGGCGCCuugcaucgcGACGgGGAUgucgaGugGUUCGc -3'
miRNA:   3'- -CGUCGUGGc--------UUGCgCCUA-----UugCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 11894 0.68 0.839273
Target:  5'- cGCGGCGCCGGGCGCcugcgcgcUGGCGUc-- -3'
miRNA:   3'- -CGUCGUGGCUUGCGccu-----AUUGCAagc -5'
24245 3' -50.9 NC_005263.2 + 35433 0.68 0.820723
Target:  5'- cCAGUGCCGGcguugacaucgACGCGG-UAGCGUUg- -3'
miRNA:   3'- cGUCGUGGCU-----------UGCGCCuAUUGCAAgc -5'
24245 3' -50.9 NC_005263.2 + 15354 0.66 0.886838
Target:  5'- cGCGGCGCUGAacgucguacugcgcACGCugucGGGUAGCGa--- -3'
miRNA:   3'- -CGUCGUGGCU--------------UGCG----CCUAUUGCaagc -5'
24245 3' -50.9 NC_005263.2 + 47932 0.79 0.250183
Target:  5'- gGCAGCGggcucgccCCGGGCGCGGAUcGCGUgcUCGc -3'
miRNA:   3'- -CGUCGU--------GGCUUGCGCCUAuUGCA--AGC- -5'
24245 3' -50.9 NC_005263.2 + 840 0.74 0.515916
Target:  5'- cGCAcGUcacuACCGAGCGCGGAcAGCGUacccgUCGu -3'
miRNA:   3'- -CGU-CG----UGGCUUGCGCCUaUUGCA-----AGC- -5'
24245 3' -50.9 NC_005263.2 + 17331 0.73 0.537727
Target:  5'- cCGGCGCCGGugGCuuc-GACGUUCGg -3'
miRNA:   3'- cGUCGUGGCUugCGccuaUUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 14978 0.72 0.616066
Target:  5'- gGCGGCAgCGAucuGCGCG--UGACGUUCu -3'
miRNA:   3'- -CGUCGUgGCU---UGCGCcuAUUGCAAGc -5'
24245 3' -50.9 NC_005263.2 + 17039 0.68 0.830108
Target:  5'- cGCAGCgGCUGGugGCGGcgugAACGgcUUCa -3'
miRNA:   3'- -CGUCG-UGGCUugCGCCua--UUGC--AAGc -5'
24245 3' -50.9 NC_005263.2 + 771 0.68 0.820723
Target:  5'- cGCAGCGCgauguaCGAcUGCGGGUcGACG-UCGg -3'
miRNA:   3'- -CGUCGUG------GCUuGCGCCUA-UUGCaAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.