miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 3' -50.9 NC_005263.2 + 17749 0.69 0.749782
Target:  5'- uCGGCGCCGGcggcaGCGCGGcc-GCGcUCGg -3'
miRNA:   3'- cGUCGUGGCU-----UGCGCCuauUGCaAGC- -5'
24245 3' -50.9 NC_005263.2 + 46985 0.68 0.830108
Target:  5'- cGCAGCAC--GGCGCGGAcuucGCGcgCGa -3'
miRNA:   3'- -CGUCGUGgcUUGCGCCUau--UGCaaGC- -5'
24245 3' -50.9 NC_005263.2 + 17039 0.68 0.830108
Target:  5'- cGCAGCgGCUGGugGCGGcgugAACGgcUUCa -3'
miRNA:   3'- -CGUCG-UGGCUugCGCCua--UUGC--AAGc -5'
24245 3' -50.9 NC_005263.2 + 771 0.68 0.820723
Target:  5'- cGCAGCGCgauguaCGAcUGCGGGUcGACG-UCGg -3'
miRNA:   3'- -CGUCGUG------GCUuGCGCCUA-UUGCaAGC- -5'
24245 3' -50.9 NC_005263.2 + 36683 0.68 0.820723
Target:  5'- gGCAGCAuUCGAGCGCGGGcAAgGa--- -3'
miRNA:   3'- -CGUCGU-GGCUUGCGCCUaUUgCaagc -5'
24245 3' -50.9 NC_005263.2 + 26857 0.68 0.817866
Target:  5'- aGCAGCACU--GCGCGGcuacuucgucgccgGUGACGgcugCGa -3'
miRNA:   3'- -CGUCGUGGcuUGCGCC--------------UAUUGCaa--GC- -5'
24245 3' -50.9 NC_005263.2 + 30901 0.68 0.801332
Target:  5'- uGCAGCGugcacgagUCGAGCGCGGcgAcgGCGUaCGc -3'
miRNA:   3'- -CGUCGU--------GGCUUGCGCCuaU--UGCAaGC- -5'
24245 3' -50.9 NC_005263.2 + 29913 0.69 0.770869
Target:  5'- cGCGuGC-CCGAAUGCGGAcgUAGCGcgCc -3'
miRNA:   3'- -CGU-CGuGGCUUGCGCCU--AUUGCaaGc -5'
24245 3' -50.9 NC_005263.2 + 24793 0.69 0.760395
Target:  5'- gGCGGCucGCCGGGCGuCGGcgGcGCGUauUCGg -3'
miRNA:   3'- -CGUCG--UGGCUUGC-GCCuaU-UGCA--AGC- -5'
24245 3' -50.9 NC_005263.2 + 2382 0.67 0.856901
Target:  5'- uCAGCACCGAGCGgcaggcCGGGgcaccACGcUUCGc -3'
miRNA:   3'- cGUCGUGGCUUGC------GCCUau---UGC-AAGC- -5'
24245 3' -50.9 NC_005263.2 + 42261 0.67 0.856901
Target:  5'- uGCAGCAauGcAgGCGGGUugcGCGUUCa -3'
miRNA:   3'- -CGUCGUggCuUgCGCCUAu--UGCAAGc -5'
24245 3' -50.9 NC_005263.2 + 41505 0.67 0.856901
Target:  5'- cGCGcCGCCGAACGC-GAUcGCG-UCGa -3'
miRNA:   3'- -CGUcGUGGCUUGCGcCUAuUGCaAGC- -5'
24245 3' -50.9 NC_005263.2 + 21241 0.66 0.919411
Target:  5'- --cGCAUCGAcgGCGCGGugcgcgccacguauuGccUGACGUUCGa -3'
miRNA:   3'- cguCGUGGCU--UGCGCC---------------U--AUUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 43940 0.66 0.916887
Target:  5'- uGCAGCA-CGAGCGCGGc--GCGc--- -3'
miRNA:   3'- -CGUCGUgGCUUGCGCCuauUGCaagc -5'
24245 3' -50.9 NC_005263.2 + 1532 0.66 0.903568
Target:  5'- aGCAGCuuguGCCGuucGAUGCcGAgcACGUUCGu -3'
miRNA:   3'- -CGUCG----UGGC---UUGCGcCUauUGCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 40253 0.66 0.896478
Target:  5'- -gGGCACCugGGGCGCGG-UGAucuuccgccCGUUCGc -3'
miRNA:   3'- cgUCGUGG--CUUGCGCCuAUU---------GCAAGC- -5'
24245 3' -50.9 NC_005263.2 + 9170 0.66 0.895753
Target:  5'- gGCcGUGCCGAucagcgcgaagcgACGCGGGUGcgcaaACGggCGg -3'
miRNA:   3'- -CGuCGUGGCU-------------UGCGCCUAU-----UGCaaGC- -5'
24245 3' -50.9 NC_005263.2 + 15354 0.66 0.886838
Target:  5'- cGCGGCGCUGAacgucguacugcgcACGCugucGGGUAGCGa--- -3'
miRNA:   3'- -CGUCGUGGCU--------------UGCG----CCUAUUGCaagc -5'
24245 3' -50.9 NC_005263.2 + 3146 0.67 0.881454
Target:  5'- uCAGCACCGAcgagcACGUGGccgGGC-UUCGu -3'
miRNA:   3'- cGUCGUGGCU-----UGCGCCua-UUGcAAGC- -5'
24245 3' -50.9 NC_005263.2 + 25013 0.67 0.865345
Target:  5'- -uGGCugCGGugGCGGuggcugcgGUGGCGUguacgCGg -3'
miRNA:   3'- cgUCGugGCUugCGCC--------UAUUGCAa----GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.