miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 5' -58.8 NC_005263.2 + 26970 0.66 0.467045
Target:  5'- -uCGGACU-GCaGuCCUGCGCGCCGa- -3'
miRNA:   3'- auGCUUGAgUGgC-GGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 2111 0.66 0.467045
Target:  5'- -uCGGGgUCGCCGUUcagaaUGCGCGCCa-- -3'
miRNA:   3'- auGCUUgAGUGGCGG-----ACGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 29221 0.66 0.467045
Target:  5'- cGCGuAUUUGCCGUCggcgcgcagcgGCGCGCCGa- -3'
miRNA:   3'- aUGCuUGAGUGGCGGa----------CGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 19858 0.66 0.467045
Target:  5'- aUGCGAACaaggUCACgGCgaGCGCGgCGa- -3'
miRNA:   3'- -AUGCUUG----AGUGgCGgaCGCGCgGCau -5'
24245 5' -58.8 NC_005263.2 + 47935 0.66 0.457061
Target:  5'- aGCGGGCUCGCC-CCggGCGCGgaucgCGUGc -3'
miRNA:   3'- aUGCUUGAGUGGcGGa-CGCGCg----GCAU- -5'
24245 5' -58.8 NC_005263.2 + 3180 0.66 0.457061
Target:  5'- cGCGGAauaACUGCCgcUGCGCGUCGg- -3'
miRNA:   3'- aUGCUUgagUGGCGG--ACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 44845 0.66 0.457061
Target:  5'- gGCGAuACUCGacgcCUGUCUGCGCGgCGa- -3'
miRNA:   3'- aUGCU-UGAGU----GGCGGACGCGCgGCau -5'
24245 5' -58.8 NC_005263.2 + 9980 0.66 0.457061
Target:  5'- gUGCGcACgccguccgguUCGCCGuCUUGCGCGCCa-- -3'
miRNA:   3'- -AUGCuUG----------AGUGGC-GGACGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 1264 0.66 0.447193
Target:  5'- gACGuGCUCcuuggcgcGCCGCCUG-GCGCgCGUu -3'
miRNA:   3'- aUGCuUGAG--------UGGCGGACgCGCG-GCAu -5'
24245 5' -58.8 NC_005263.2 + 14998 0.66 0.447193
Target:  5'- gACGuucuGCUCGCCGgCUaucGC-CGCCGUGu -3'
miRNA:   3'- aUGCu---UGAGUGGCgGA---CGcGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 1934 0.66 0.437444
Target:  5'- cACGAGCgCGCCGgcaCCgGCGaCGCCGg- -3'
miRNA:   3'- aUGCUUGaGUGGC---GGaCGC-GCGGCau -5'
24245 5' -58.8 NC_005263.2 + 10872 0.66 0.437444
Target:  5'- gGCgGAACUCggcACCGgC-GCGCGUCGUGa -3'
miRNA:   3'- aUG-CUUGAG---UGGCgGaCGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 34539 0.66 0.437444
Target:  5'- cAUGGACaCGCCGCUcgUGcCGCGcCCGUAc -3'
miRNA:   3'- aUGCUUGaGUGGCGG--AC-GCGC-GGCAU- -5'
24245 5' -58.8 NC_005263.2 + 27656 0.66 0.436476
Target:  5'- gACGAACgucucggCggcggcaagcacgGCCGCCuucuugUGCGCGCCGg- -3'
miRNA:   3'- aUGCUUGa------G-------------UGGCGG------ACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 6238 0.66 0.427818
Target:  5'- -cCGAucGCUCGCgGCCagGCGCgGUCGUGc -3'
miRNA:   3'- auGCU--UGAGUGgCGGa-CGCG-CGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 7448 0.67 0.422103
Target:  5'- cACGAaugccaaggcuuccuGCUgcaCGCCGCUUGCGCGCUu-- -3'
miRNA:   3'- aUGCU---------------UGA---GUGGCGGACGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 18579 0.67 0.418319
Target:  5'- gGCGucccGGC-CACUGCUgGCGCGCCGa- -3'
miRNA:   3'- aUGC----UUGaGUGGCGGaCGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 25718 0.67 0.418319
Target:  5'- gGCGc-CUCuuuCCugGCgCUGCGCGCCGUGc -3'
miRNA:   3'- aUGCuuGAGu--GG--CG-GACGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 32647 0.67 0.417376
Target:  5'- cACGGcaaaucgucGCUCauuucgcGCUGCCU-CGCGCCGUAc -3'
miRNA:   3'- aUGCU---------UGAG-------UGGCGGAcGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 37217 0.67 0.408949
Target:  5'- gGCGAua-CGCCGCUcacgacGCGCGCCGg- -3'
miRNA:   3'- aUGCUugaGUGGCGGa-----CGCGCGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.