Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24245 | 5' | -58.8 | NC_005263.2 | + | 26970 | 0.66 | 0.467045 |
Target: 5'- -uCGGACU-GCaGuCCUGCGCGCCGa- -3' miRNA: 3'- auGCUUGAgUGgC-GGACGCGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 44845 | 0.66 | 0.457061 |
Target: 5'- gGCGAuACUCGacgcCUGUCUGCGCGgCGa- -3' miRNA: 3'- aUGCU-UGAGU----GGCGGACGCGCgGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 9980 | 0.66 | 0.457061 |
Target: 5'- gUGCGcACgccguccgguUCGCCGuCUUGCGCGCCa-- -3' miRNA: 3'- -AUGCuUG----------AGUGGC-GGACGCGCGGcau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 19858 | 0.66 | 0.467045 |
Target: 5'- aUGCGAACaaggUCACgGCgaGCGCGgCGa- -3' miRNA: 3'- -AUGCUUG----AGUGgCGgaCGCGCgGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 29221 | 0.66 | 0.467045 |
Target: 5'- cGCGuAUUUGCCGUCggcgcgcagcgGCGCGCCGa- -3' miRNA: 3'- aUGCuUGAGUGGCGGa----------CGCGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 1264 | 0.66 | 0.447193 |
Target: 5'- gACGuGCUCcuuggcgcGCCGCCUG-GCGCgCGUu -3' miRNA: 3'- aUGCuUGAG--------UGGCGGACgCGCG-GCAu -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 6238 | 0.66 | 0.427818 |
Target: 5'- -cCGAucGCUCGCgGCCagGCGCgGUCGUGc -3' miRNA: 3'- auGCU--UGAGUGgCGGa-CGCG-CGGCAU- -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 27656 | 0.66 | 0.436476 |
Target: 5'- gACGAACgucucggCggcggcaagcacgGCCGCCuucuugUGCGCGCCGg- -3' miRNA: 3'- aUGCUUGa------G-------------UGGCGG------ACGCGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 10872 | 0.66 | 0.437444 |
Target: 5'- gGCgGAACUCggcACCGgC-GCGCGUCGUGa -3' miRNA: 3'- aUG-CUUGAG---UGGCgGaCGCGCGGCAU- -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 2111 | 0.66 | 0.467045 |
Target: 5'- -uCGGGgUCGCCGUUcagaaUGCGCGCCa-- -3' miRNA: 3'- auGCUUgAGUGGCGG-----ACGCGCGGcau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 47935 | 0.66 | 0.457061 |
Target: 5'- aGCGGGCUCGCC-CCggGCGCGgaucgCGUGc -3' miRNA: 3'- aUGCUUGAGUGGcGGa-CGCGCg----GCAU- -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 3180 | 0.66 | 0.457061 |
Target: 5'- cGCGGAauaACUGCCgcUGCGCGUCGg- -3' miRNA: 3'- aUGCUUgagUGGCGG--ACGCGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 1934 | 0.66 | 0.437444 |
Target: 5'- cACGAGCgCGCCGgcaCCgGCGaCGCCGg- -3' miRNA: 3'- aUGCUUGaGUGGC---GGaCGC-GCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 14998 | 0.66 | 0.447193 |
Target: 5'- gACGuucuGCUCGCCGgCUaucGC-CGCCGUGu -3' miRNA: 3'- aUGCu---UGAGUGGCgGA---CGcGCGGCAU- -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 34539 | 0.66 | 0.437444 |
Target: 5'- cAUGGACaCGCCGCUcgUGcCGCGcCCGUAc -3' miRNA: 3'- aUGCUUGaGUGGCGG--AC-GCGC-GGCAU- -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 17885 | 0.67 | 0.390608 |
Target: 5'- cGCGAACgaucagUCgACCGgCgGCGCGCCGa- -3' miRNA: 3'- aUGCUUG------AG-UGGCgGaCGCGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 31297 | 0.67 | 0.399711 |
Target: 5'- --aGAACUCgcccACCGUgUGCGCGCaUGUGc -3' miRNA: 3'- augCUUGAG----UGGCGgACGCGCG-GCAU- -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 33195 | 0.67 | 0.408019 |
Target: 5'- -cCGGACUUGCCGCUUGgcgcacuCGUGCCGc- -3' miRNA: 3'- auGCUUGAGUGGCGGAC-------GCGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 36112 | 0.67 | 0.381641 |
Target: 5'- gACGAGCUgGcCCGUaacacgacgCUGCGCGCCu-- -3' miRNA: 3'- aUGCUUGAgU-GGCG---------GACGCGCGGcau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 9329 | 0.67 | 0.399711 |
Target: 5'- gGCGAAgUCGCCGgCaaUGCcuuGCGCCGg- -3' miRNA: 3'- aUGCUUgAGUGGCgG--ACG---CGCGGCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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