miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 5' -58.8 NC_005263.2 + 32742 0.67 0.381641
Target:  5'- gUACGcGCU-GCCGCUUGCGCGgCGc- -3'
miRNA:   3'- -AUGCuUGAgUGGCGGACGCGCgGCau -5'
24245 5' -58.8 NC_005263.2 + 25718 0.67 0.418319
Target:  5'- gGCGc-CUCuuuCCugGCgCUGCGCGCCGUGc -3'
miRNA:   3'- aUGCuuGAGu--GG--CG-GACGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 32647 0.67 0.417376
Target:  5'- cACGGcaaaucgucGCUCauuucgcGCUGCCU-CGCGCCGUAc -3'
miRNA:   3'- aUGCU---------UGAG-------UGGCGGAcGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 33195 0.67 0.408019
Target:  5'- -cCGGACUUGCCGCUUGgcgcacuCGUGCCGc- -3'
miRNA:   3'- auGCUUGAGUGGCGGAC-------GCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 31297 0.67 0.399711
Target:  5'- --aGAACUCgcccACCGUgUGCGCGCaUGUGc -3'
miRNA:   3'- augCUUGAG----UGGCGgACGCGCG-GCAU- -5'
24245 5' -58.8 NC_005263.2 + 47538 0.67 0.372812
Target:  5'- -cCGAuCUCGCauuccaagGCCUGCGCGCCc-- -3'
miRNA:   3'- auGCUuGAGUGg-------CGGACGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 17885 0.67 0.390608
Target:  5'- cGCGAACgaucagUCgACCGgCgGCGCGCCGa- -3'
miRNA:   3'- aUGCUUG------AG-UGGCgGaCGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 19060 0.67 0.390608
Target:  5'- gACGcGCcgCGCgGCCUGCGCGCg--- -3'
miRNA:   3'- aUGCuUGa-GUGgCGGACGCGCGgcau -5'
24245 5' -58.8 NC_005263.2 + 21899 0.68 0.33079
Target:  5'- cGCGAACg-GCCGCCgcaucGCGCgGCCGc- -3'
miRNA:   3'- aUGCUUGagUGGCGGa----CGCG-CGGCau -5'
24245 5' -58.8 NC_005263.2 + 41523 0.68 0.354729
Target:  5'- cGCGucGACUacUugCGCCUgcgcaaacgcgcgGCGCGCCGUGg -3'
miRNA:   3'- aUGC--UUGA--GugGCGGA-------------CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 42230 0.68 0.33079
Target:  5'- gACGGACUUcggcccguACCGCCUGCG-GCuCGa- -3'
miRNA:   3'- aUGCUUGAG--------UGGCGGACGCgCG-GCau -5'
24245 5' -58.8 NC_005263.2 + 18868 0.68 0.355576
Target:  5'- cGCGugcCUCGgCGCgccgCUGCGCGCCGa- -3'
miRNA:   3'- aUGCuu-GAGUgGCG----GACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 39251 0.68 0.34717
Target:  5'- aGCgGGGCUCG-CGCCccGCGCGCCGc- -3'
miRNA:   3'- aUG-CUUGAGUgGCGGa-CGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 35961 0.68 0.34717
Target:  5'- cUGCGugcaaggcGCUCgACCGCCUGgaGCGCgCGUAa -3'
miRNA:   3'- -AUGCu-------UGAG-UGGCGGACg-CGCG-GCAU- -5'
24245 5' -58.8 NC_005263.2 + 35552 0.68 0.338908
Target:  5'- gGCGGGCgcuacggCGCCGCCgGC-CGCCGc- -3'
miRNA:   3'- aUGCUUGa------GUGGCGGaCGcGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 30571 0.68 0.322815
Target:  5'- aACG-ACUucaCGCCGCUgcGCGCGCUGUAc -3'
miRNA:   3'- aUGCuUGA---GUGGCGGa-CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 45407 0.68 0.322026
Target:  5'- gACGAACUCggucugucggccGCCGCCgGCGCgacacugcaggcuGCCGg- -3'
miRNA:   3'- aUGCUUGAG------------UGGCGGaCGCG-------------CGGCau -5'
24245 5' -58.8 NC_005263.2 + 35435 0.68 0.355576
Target:  5'- cGCGAACgacgACC-CCgGCGCGCCGg- -3'
miRNA:   3'- aUGCUUGag--UGGcGGaCGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 15768 0.68 0.355576
Target:  5'- gGCGAGCUCcuucaGCUGCucgacgaccaCUGCGCGCUGc- -3'
miRNA:   3'- aUGCUUGAG-----UGGCG----------GACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 25612 0.68 0.364123
Target:  5'- -cCGAAC-CGCCGCCgGC-CGCCGc- -3'
miRNA:   3'- auGCUUGaGUGGCGGaCGcGCGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.