miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 5' -58.8 NC_005263.2 + 6043 1.05 0.000624
Target:  5'- gUACGAACUCACCGCCUGCGCGCCGUAg -3'
miRNA:   3'- -AUGCUUGAGUGGCGGACGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 22403 0.77 0.085986
Target:  5'- cGCGAACguacgCGCCGCCgUGCuCGCCGUGu -3'
miRNA:   3'- aUGCUUGa----GUGGCGG-ACGcGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 6545 0.75 0.107955
Target:  5'- cGCGAAagcucgcaUCGCCGCCacgGCGCGCCGc- -3'
miRNA:   3'- aUGCUUg-------AGUGGCGGa--CGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 11385 0.74 0.138915
Target:  5'- cACuu-CUCGCgGCCUGCGCGCaCGUGg -3'
miRNA:   3'- aUGcuuGAGUGgCGGACGCGCG-GCAU- -5'
24245 5' -58.8 NC_005263.2 + 3600 0.74 0.138915
Target:  5'- aGCGAuuguAUUCGCCcaaucgggcGCCUGCGgGCCGUAg -3'
miRNA:   3'- aUGCU----UGAGUGG---------CGGACGCgCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 30192 0.73 0.150931
Target:  5'- gUugGAGCccggggcgCGCCGaUCUGCGCGCCGUu -3'
miRNA:   3'- -AugCUUGa-------GUGGC-GGACGCGCGGCAu -5'
24245 5' -58.8 NC_005263.2 + 29347 0.73 0.15946
Target:  5'- cGCGAGCaccgCGCCGCCUacgauCGCGCCGa- -3'
miRNA:   3'- aUGCUUGa---GUGGCGGAc----GCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 28356 0.73 0.163885
Target:  5'- cACGAGC--GCCGCCaGCGCGCCa-- -3'
miRNA:   3'- aUGCUUGagUGGCGGaCGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 21580 0.72 0.173068
Target:  5'- cGCGuGCUCGCCGCCgGCGUcgacGCCGc- -3'
miRNA:   3'- aUGCuUGAGUGGCGGaCGCG----CGGCau -5'
24245 5' -58.8 NC_005263.2 + 184 0.72 0.198056
Target:  5'- gGCGAGCcCGCUGCCcGUGCGCCc-- -3'
miRNA:   3'- aUGCUUGaGUGGCGGaCGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 38542 0.72 0.182708
Target:  5'- aGCGAGCgCGCCGCCUGgcaagccgcgaGCGCCGc- -3'
miRNA:   3'- aUGCUUGaGUGGCGGACg----------CGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 2276 0.71 0.232137
Target:  5'- aGCGcgUUCGCCGUCggcaggucGUGCGCCGUGg -3'
miRNA:   3'- aUGCuuGAGUGGCGGa-------CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 2249 0.71 0.208903
Target:  5'- -uCGAACUUGCCGUa-GCGCGCCGc- -3'
miRNA:   3'- auGCUUGAGUGGCGgaCGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 953 0.71 0.226132
Target:  5'- cGCGAGCggCGacguagcggcggUCGCCUGCGCGUCGg- -3'
miRNA:   3'- aUGCUUGa-GU------------GGCGGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 11889 0.71 0.232137
Target:  5'- gACGAcGCggCGCCgggcGCCUGCGCGCUGg- -3'
miRNA:   3'- aUGCU-UGa-GUGG----CGGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 23509 0.71 0.226132
Target:  5'- cUGCGccGC-CACCGCCUGCGC-CCGa- -3'
miRNA:   3'- -AUGCu-UGaGUGGCGGACGCGcGGCau -5'
24245 5' -58.8 NC_005263.2 + 700 0.71 0.208903
Target:  5'- cGCGAucguGC-CGCCGCCcGCgaGCGCCGUGg -3'
miRNA:   3'- aUGCU----UGaGUGGCGGaCG--CGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 23159 0.71 0.203417
Target:  5'- cUGCGAACcgcgCACCGCCgUGC-CGCCGc- -3'
miRNA:   3'- -AUGCUUGa---GUGGCGG-ACGcGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 41572 0.7 0.24455
Target:  5'- aUGCGAGCuuUCGCgCGUaUGCGCGCCGc- -3'
miRNA:   3'- -AUGCUUG--AGUG-GCGgACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 41482 0.7 0.271025
Target:  5'- cGCGAcuGCUCGaccgCGCCgaGCGCGCCGc- -3'
miRNA:   3'- aUGCU--UGAGUg---GCGGa-CGCGCGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.