Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24245 | 5' | -58.8 | NC_005263.2 | + | 41523 | 0.68 | 0.354729 |
Target: 5'- cGCGucGACUacUugCGCCUgcgcaaacgcgcgGCGCGCCGUGg -3' miRNA: 3'- aUGC--UUGA--GugGCGGA-------------CGCGCGGCAU- -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 15768 | 0.68 | 0.355576 |
Target: 5'- gGCGAGCUCcuucaGCUGCucgacgaccaCUGCGCGCUGc- -3' miRNA: 3'- aUGCUUGAG-----UGGCG----------GACGCGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 35435 | 0.68 | 0.355576 |
Target: 5'- cGCGAACgacgACC-CCgGCGCGCCGg- -3' miRNA: 3'- aUGCUUGag--UGGcGGaCGCGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 18868 | 0.68 | 0.355576 |
Target: 5'- cGCGugcCUCGgCGCgccgCUGCGCGCCGa- -3' miRNA: 3'- aUGCuu-GAGUgGCG----GACGCGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 25612 | 0.68 | 0.364123 |
Target: 5'- -cCGAAC-CGCCGCCgGC-CGCCGc- -3' miRNA: 3'- auGCUUGaGUGGCGGaCGcGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 47538 | 0.67 | 0.372812 |
Target: 5'- -cCGAuCUCGCauuccaagGCCUGCGCGCCc-- -3' miRNA: 3'- auGCUuGAGUGg-------CGGACGCGCGGcau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 32742 | 0.67 | 0.381641 |
Target: 5'- gUACGcGCU-GCCGCUUGCGCGgCGc- -3' miRNA: 3'- -AUGCuUGAgUGGCGGACGCGCgGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 36112 | 0.67 | 0.381641 |
Target: 5'- gACGAGCUgGcCCGUaacacgacgCUGCGCGCCu-- -3' miRNA: 3'- aUGCUUGAgU-GGCG---------GACGCGCGGcau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 17885 | 0.67 | 0.390608 |
Target: 5'- cGCGAACgaucagUCgACCGgCgGCGCGCCGa- -3' miRNA: 3'- aUGCUUG------AG-UGGCgGaCGCGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 19060 | 0.67 | 0.390608 |
Target: 5'- gACGcGCcgCGCgGCCUGCGCGCg--- -3' miRNA: 3'- aUGCuUGa-GUGgCGGACGCGCGgcau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 9329 | 0.67 | 0.399711 |
Target: 5'- gGCGAAgUCGCCGgCaaUGCcuuGCGCCGg- -3' miRNA: 3'- aUGCUUgAGUGGCgG--ACG---CGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 31297 | 0.67 | 0.399711 |
Target: 5'- --aGAACUCgcccACCGUgUGCGCGCaUGUGc -3' miRNA: 3'- augCUUGAG----UGGCGgACGCGCG-GCAU- -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 33195 | 0.67 | 0.408019 |
Target: 5'- -cCGGACUUGCCGCUUGgcgcacuCGUGCCGc- -3' miRNA: 3'- auGCUUGAGUGGCGGAC-------GCGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 37217 | 0.67 | 0.408949 |
Target: 5'- gGCGAua-CGCCGCUcacgacGCGCGCCGg- -3' miRNA: 3'- aUGCUugaGUGGCGGa-----CGCGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 32647 | 0.67 | 0.417376 |
Target: 5'- cACGGcaaaucgucGCUCauuucgcGCUGCCU-CGCGCCGUAc -3' miRNA: 3'- aUGCU---------UGAG-------UGGCGGAcGCGCGGCAU- -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 25718 | 0.67 | 0.418319 |
Target: 5'- gGCGc-CUCuuuCCugGCgCUGCGCGCCGUGc -3' miRNA: 3'- aUGCuuGAGu--GG--CG-GACGCGCGGCAU- -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 18579 | 0.67 | 0.418319 |
Target: 5'- gGCGucccGGC-CACUGCUgGCGCGCCGa- -3' miRNA: 3'- aUGC----UUGaGUGGCGGaCGCGCGGCau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 7448 | 0.67 | 0.422103 |
Target: 5'- cACGAaugccaaggcuuccuGCUgcaCGCCGCUUGCGCGCUu-- -3' miRNA: 3'- aUGCU---------------UGA---GUGGCGGACGCGCGGcau -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 6238 | 0.66 | 0.427818 |
Target: 5'- -cCGAucGCUCGCgGCCagGCGCgGUCGUGc -3' miRNA: 3'- auGCU--UGAGUGgCGGa-CGCG-CGGCAU- -5' |
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24245 | 5' | -58.8 | NC_005263.2 | + | 27656 | 0.66 | 0.436476 |
Target: 5'- gACGAACgucucggCggcggcaagcacgGCCGCCuucuugUGCGCGCCGg- -3' miRNA: 3'- aUGCUUGa------G-------------UGGCGG------ACGCGCGGCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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