miRNA display CGI


Results 41 - 60 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 5' -58.8 NC_005263.2 + 45407 0.68 0.322026
Target:  5'- gACGAACUCggucugucggccGCCGCCgGCGCgacacugcaggcuGCCGg- -3'
miRNA:   3'- aUGCUUGAG------------UGGCGGaCGCG-------------CGGCau -5'
24245 5' -58.8 NC_005263.2 + 23558 0.69 0.307299
Target:  5'- gGCGcAGC-CGCCGCCgccCGCGCCGc- -3'
miRNA:   3'- aUGC-UUGaGUGGCGGac-GCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 22677 0.69 0.307299
Target:  5'- gACGAACcccgCACCGCa--CGCGCCGa- -3'
miRNA:   3'- aUGCUUGa---GUGGCGgacGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 32420 0.69 0.307299
Target:  5'- cUGCGAGCUCGCCgGCCgcucuugGCaCGCCa-- -3'
miRNA:   3'- -AUGCUUGAGUGG-CGGa------CGcGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 28708 0.69 0.299758
Target:  5'- cGCGcGCgUUGCCGUaCUGCGCGCCGc- -3'
miRNA:   3'- aUGCuUG-AGUGGCG-GACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 10550 0.69 0.299758
Target:  5'- cGCGggUugUCgGCCGUCUGCGCGaCGUGc -3'
miRNA:   3'- aUGCuuG--AG-UGGCGGACGCGCgGCAU- -5'
24245 5' -58.8 NC_005263.2 + 23918 0.69 0.284388
Target:  5'- cGCGAGCgugaccgUCGCUuuggcgGCUUGCGCGUCGUGa -3'
miRNA:   3'- aUGCUUG-------AGUGG------CGGACGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 41482 0.7 0.271025
Target:  5'- cGCGAcuGCUCGaccgCGCCgaGCGCGCCGc- -3'
miRNA:   3'- aUGCU--UGAGUg---GCGGa-CGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 20968 0.7 0.263522
Target:  5'- -uCGGACaUCGCCgacgcggcugcgcGCCUGCGCGUCGa- -3'
miRNA:   3'- auGCUUG-AGUGG-------------CGGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 31529 0.7 0.262176
Target:  5'- gGCGAACgcgUCGCCGCCggccuuggcgucgcUgcccaggcgGCGCGCCGUGc -3'
miRNA:   3'- aUGCUUG---AGUGGCGG--------------A---------CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 41572 0.7 0.24455
Target:  5'- aUGCGAGCuuUCGCgCGUaUGCGCGCCGc- -3'
miRNA:   3'- -AUGCUUG--AGUG-GCGgACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 3322 0.7 0.238276
Target:  5'- cGCGGugUUcaaCGUCUGCGCGCCGc- -3'
miRNA:   3'- aUGCUugAGug-GCGGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 32691 0.7 0.238276
Target:  5'- gUACGGccgGCUCACCgGCUUGCugccCGCCGUGc -3'
miRNA:   3'- -AUGCU---UGAGUGG-CGGACGc---GCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 3106 0.7 0.238276
Target:  5'- cGCGAGC-CACggCGCCaUGCGCGCCu-- -3'
miRNA:   3'- aUGCUUGaGUG--GCGG-ACGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 36582 0.7 0.238276
Target:  5'- gACGAACcgCGCCGCCUucaucGCGCGCg--- -3'
miRNA:   3'- aUGCUUGa-GUGGCGGA-----CGCGCGgcau -5'
24245 5' -58.8 NC_005263.2 + 11889 0.71 0.232137
Target:  5'- gACGAcGCggCGCCgggcGCCUGCGCGCUGg- -3'
miRNA:   3'- aUGCU-UGa-GUGG----CGGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 2276 0.71 0.232137
Target:  5'- aGCGcgUUCGCCGUCggcaggucGUGCGCCGUGg -3'
miRNA:   3'- aUGCuuGAGUGGCGGa-------CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 23509 0.71 0.226132
Target:  5'- cUGCGccGC-CACCGCCUGCGC-CCGa- -3'
miRNA:   3'- -AUGCu-UGaGUGGCGGACGCGcGGCau -5'
24245 5' -58.8 NC_005263.2 + 953 0.71 0.226132
Target:  5'- cGCGAGCggCGacguagcggcggUCGCCUGCGCGUCGg- -3'
miRNA:   3'- aUGCUUGa-GU------------GGCGGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 700 0.71 0.208903
Target:  5'- cGCGAucguGC-CGCCGCCcGCgaGCGCCGUGg -3'
miRNA:   3'- aUGCU----UGaGUGGCGGaCG--CGCGGCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.