miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 5' -58.8 NC_005263.2 + 184 0.72 0.198056
Target:  5'- gGCGAGCcCGCUGCCcGUGCGCCc-- -3'
miRNA:   3'- aUGCUUGaGUGGCGGaCGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 700 0.71 0.208903
Target:  5'- cGCGAucguGC-CGCCGCCcGCgaGCGCCGUGg -3'
miRNA:   3'- aUGCU----UGaGUGGCGGaCG--CGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 953 0.71 0.226132
Target:  5'- cGCGAGCggCGacguagcggcggUCGCCUGCGCGUCGg- -3'
miRNA:   3'- aUGCUUGa-GU------------GGCGGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 1264 0.66 0.447193
Target:  5'- gACGuGCUCcuuggcgcGCCGCCUG-GCGCgCGUu -3'
miRNA:   3'- aUGCuUGAG--------UGGCGGACgCGCG-GCAu -5'
24245 5' -58.8 NC_005263.2 + 1934 0.66 0.437444
Target:  5'- cACGAGCgCGCCGgcaCCgGCGaCGCCGg- -3'
miRNA:   3'- aUGCUUGaGUGGC---GGaCGC-GCGGCau -5'
24245 5' -58.8 NC_005263.2 + 2111 0.66 0.467045
Target:  5'- -uCGGGgUCGCCGUUcagaaUGCGCGCCa-- -3'
miRNA:   3'- auGCUUgAGUGGCGG-----ACGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 2249 0.71 0.208903
Target:  5'- -uCGAACUUGCCGUa-GCGCGCCGc- -3'
miRNA:   3'- auGCUUGAGUGGCGgaCGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 2276 0.71 0.232137
Target:  5'- aGCGcgUUCGCCGUCggcaggucGUGCGCCGUGg -3'
miRNA:   3'- aUGCuuGAGUGGCGGa-------CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 3106 0.7 0.238276
Target:  5'- cGCGAGC-CACggCGCCaUGCGCGCCu-- -3'
miRNA:   3'- aUGCUUGaGUG--GCGG-ACGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 3180 0.66 0.457061
Target:  5'- cGCGGAauaACUGCCgcUGCGCGUCGg- -3'
miRNA:   3'- aUGCUUgagUGGCGG--ACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 3322 0.7 0.238276
Target:  5'- cGCGGugUUcaaCGUCUGCGCGCCGc- -3'
miRNA:   3'- aUGCUugAGug-GCGGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 3600 0.74 0.138915
Target:  5'- aGCGAuuguAUUCGCCcaaucgggcGCCUGCGgGCCGUAg -3'
miRNA:   3'- aUGCU----UGAGUGG---------CGGACGCgCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 6043 1.05 0.000624
Target:  5'- gUACGAACUCACCGCCUGCGCGCCGUAg -3'
miRNA:   3'- -AUGCUUGAGUGGCGGACGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 6238 0.66 0.427818
Target:  5'- -cCGAucGCUCGCgGCCagGCGCgGUCGUGc -3'
miRNA:   3'- auGCU--UGAGUGgCGGa-CGCG-CGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 6545 0.75 0.107955
Target:  5'- cGCGAAagcucgcaUCGCCGCCacgGCGCGCCGc- -3'
miRNA:   3'- aUGCUUg-------AGUGGCGGa--CGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 7448 0.67 0.422103
Target:  5'- cACGAaugccaaggcuuccuGCUgcaCGCCGCUUGCGCGCUu-- -3'
miRNA:   3'- aUGCU---------------UGA---GUGGCGGACGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 9329 0.67 0.399711
Target:  5'- gGCGAAgUCGCCGgCaaUGCcuuGCGCCGg- -3'
miRNA:   3'- aUGCUUgAGUGGCgG--ACG---CGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 9980 0.66 0.457061
Target:  5'- gUGCGcACgccguccgguUCGCCGuCUUGCGCGCCa-- -3'
miRNA:   3'- -AUGCuUG----------AGUGGC-GGACGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 10550 0.69 0.299758
Target:  5'- cGCGggUugUCgGCCGUCUGCGCGaCGUGc -3'
miRNA:   3'- aUGCuuG--AG-UGGCGGACGCGCgGCAU- -5'
24245 5' -58.8 NC_005263.2 + 10872 0.66 0.437444
Target:  5'- gGCgGAACUCggcACCGgC-GCGCGUCGUGa -3'
miRNA:   3'- aUG-CUUGAG---UGGCgGaCGCGCGGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.