miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 5' -58.8 NC_005263.2 + 25718 0.67 0.418319
Target:  5'- gGCGc-CUCuuuCCugGCgCUGCGCGCCGUGc -3'
miRNA:   3'- aUGCuuGAGu--GG--CG-GACGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 26970 0.66 0.467045
Target:  5'- -uCGGACU-GCaGuCCUGCGCGCCGa- -3'
miRNA:   3'- auGCUUGAgUGgC-GGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 27656 0.66 0.436476
Target:  5'- gACGAACgucucggCggcggcaagcacgGCCGCCuucuugUGCGCGCCGg- -3'
miRNA:   3'- aUGCUUGa------G-------------UGGCGG------ACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 28356 0.73 0.163885
Target:  5'- cACGAGC--GCCGCCaGCGCGCCa-- -3'
miRNA:   3'- aUGCUUGagUGGCGGaCGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 28708 0.69 0.299758
Target:  5'- cGCGcGCgUUGCCGUaCUGCGCGCCGc- -3'
miRNA:   3'- aUGCuUG-AGUGGCG-GACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 29221 0.66 0.467045
Target:  5'- cGCGuAUUUGCCGUCggcgcgcagcgGCGCGCCGa- -3'
miRNA:   3'- aUGCuUGAGUGGCGGa----------CGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 29347 0.73 0.15946
Target:  5'- cGCGAGCaccgCGCCGCCUacgauCGCGCCGa- -3'
miRNA:   3'- aUGCUUGa---GUGGCGGAc----GCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 30192 0.73 0.150931
Target:  5'- gUugGAGCccggggcgCGCCGaUCUGCGCGCCGUu -3'
miRNA:   3'- -AugCUUGa-------GUGGC-GGACGCGCGGCAu -5'
24245 5' -58.8 NC_005263.2 + 30571 0.68 0.322815
Target:  5'- aACG-ACUucaCGCCGCUgcGCGCGCUGUAc -3'
miRNA:   3'- aUGCuUGA---GUGGCGGa-CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 31297 0.67 0.399711
Target:  5'- --aGAACUCgcccACCGUgUGCGCGCaUGUGc -3'
miRNA:   3'- augCUUGAG----UGGCGgACGCGCG-GCAU- -5'
24245 5' -58.8 NC_005263.2 + 31529 0.7 0.262176
Target:  5'- gGCGAACgcgUCGCCGCCggccuuggcgucgcUgcccaggcgGCGCGCCGUGc -3'
miRNA:   3'- aUGCUUG---AGUGGCGG--------------A---------CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 32420 0.69 0.307299
Target:  5'- cUGCGAGCUCGCCgGCCgcucuugGCaCGCCa-- -3'
miRNA:   3'- -AUGCUUGAGUGG-CGGa------CGcGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 32647 0.67 0.417376
Target:  5'- cACGGcaaaucgucGCUCauuucgcGCUGCCU-CGCGCCGUAc -3'
miRNA:   3'- aUGCU---------UGAG-------UGGCGGAcGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 32691 0.7 0.238276
Target:  5'- gUACGGccgGCUCACCgGCUUGCugccCGCCGUGc -3'
miRNA:   3'- -AUGCU---UGAGUGG-CGGACGc---GCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 32742 0.67 0.381641
Target:  5'- gUACGcGCU-GCCGCUUGCGCGgCGc- -3'
miRNA:   3'- -AUGCuUGAgUGGCGGACGCGCgGCau -5'
24245 5' -58.8 NC_005263.2 + 33195 0.67 0.408019
Target:  5'- -cCGGACUUGCCGCUUGgcgcacuCGUGCCGc- -3'
miRNA:   3'- auGCUUGAGUGGCGGAC-------GCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 34539 0.66 0.437444
Target:  5'- cAUGGACaCGCCGCUcgUGcCGCGcCCGUAc -3'
miRNA:   3'- aUGCUUGaGUGGCGG--AC-GCGC-GGCAU- -5'
24245 5' -58.8 NC_005263.2 + 35435 0.68 0.355576
Target:  5'- cGCGAACgacgACC-CCgGCGCGCCGg- -3'
miRNA:   3'- aUGCUUGag--UGGcGGaCGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 35552 0.68 0.338908
Target:  5'- gGCGGGCgcuacggCGCCGCCgGC-CGCCGc- -3'
miRNA:   3'- aUGCUUGa------GUGGCGGaCGcGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 35961 0.68 0.34717
Target:  5'- cUGCGugcaaggcGCUCgACCGCCUGgaGCGCgCGUAa -3'
miRNA:   3'- -AUGCu-------UGAG-UGGCGGACg-CGCG-GCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.