miRNA display CGI


Results 61 - 73 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 5' -58.8 NC_005263.2 + 36112 0.67 0.381641
Target:  5'- gACGAGCUgGcCCGUaacacgacgCUGCGCGCCu-- -3'
miRNA:   3'- aUGCUUGAgU-GGCG---------GACGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 36582 0.7 0.238276
Target:  5'- gACGAACcgCGCCGCCUucaucGCGCGCg--- -3'
miRNA:   3'- aUGCUUGa-GUGGCGGA-----CGCGCGgcau -5'
24245 5' -58.8 NC_005263.2 + 37217 0.67 0.408949
Target:  5'- gGCGAua-CGCCGCUcacgacGCGCGCCGg- -3'
miRNA:   3'- aUGCUugaGUGGCGGa-----CGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 38542 0.72 0.182708
Target:  5'- aGCGAGCgCGCCGCCUGgcaagccgcgaGCGCCGc- -3'
miRNA:   3'- aUGCUUGaGUGGCGGACg----------CGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 39251 0.68 0.34717
Target:  5'- aGCgGGGCUCG-CGCCccGCGCGCCGc- -3'
miRNA:   3'- aUG-CUUGAGUgGCGGa-CGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 41482 0.7 0.271025
Target:  5'- cGCGAcuGCUCGaccgCGCCgaGCGCGCCGc- -3'
miRNA:   3'- aUGCU--UGAGUg---GCGGa-CGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 41523 0.68 0.354729
Target:  5'- cGCGucGACUacUugCGCCUgcgcaaacgcgcgGCGCGCCGUGg -3'
miRNA:   3'- aUGC--UUGA--GugGCGGA-------------CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 41572 0.7 0.24455
Target:  5'- aUGCGAGCuuUCGCgCGUaUGCGCGCCGc- -3'
miRNA:   3'- -AUGCUUG--AGUG-GCGgACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 42230 0.68 0.33079
Target:  5'- gACGGACUUcggcccguACCGCCUGCG-GCuCGa- -3'
miRNA:   3'- aUGCUUGAG--------UGGCGGACGCgCG-GCau -5'
24245 5' -58.8 NC_005263.2 + 44845 0.66 0.457061
Target:  5'- gGCGAuACUCGacgcCUGUCUGCGCGgCGa- -3'
miRNA:   3'- aUGCU-UGAGU----GGCGGACGCGCgGCau -5'
24245 5' -58.8 NC_005263.2 + 45407 0.68 0.322026
Target:  5'- gACGAACUCggucugucggccGCCGCCgGCGCgacacugcaggcuGCCGg- -3'
miRNA:   3'- aUGCUUGAG------------UGGCGGaCGCG-------------CGGCau -5'
24245 5' -58.8 NC_005263.2 + 47538 0.67 0.372812
Target:  5'- -cCGAuCUCGCauuccaagGCCUGCGCGCCc-- -3'
miRNA:   3'- auGCUuGAGUGg-------CGGACGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 47935 0.66 0.457061
Target:  5'- aGCGGGCUCGCC-CCggGCGCGgaucgCGUGc -3'
miRNA:   3'- aUGCUUGAGUGGcGGa-CGCGCg----GCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.