miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 5' -58.8 NC_005263.2 + 32647 0.67 0.417376
Target:  5'- cACGGcaaaucgucGCUCauuucgcGCUGCCU-CGCGCCGUAc -3'
miRNA:   3'- aUGCU---------UGAG-------UGGCGGAcGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 32420 0.69 0.307299
Target:  5'- cUGCGAGCUCGCCgGCCgcucuugGCaCGCCa-- -3'
miRNA:   3'- -AUGCUUGAGUGG-CGGa------CGcGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 31529 0.7 0.262176
Target:  5'- gGCGAACgcgUCGCCGCCggccuuggcgucgcUgcccaggcgGCGCGCCGUGc -3'
miRNA:   3'- aUGCUUG---AGUGGCGG--------------A---------CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 31297 0.67 0.399711
Target:  5'- --aGAACUCgcccACCGUgUGCGCGCaUGUGc -3'
miRNA:   3'- augCUUGAG----UGGCGgACGCGCG-GCAU- -5'
24245 5' -58.8 NC_005263.2 + 30571 0.68 0.322815
Target:  5'- aACG-ACUucaCGCCGCUgcGCGCGCUGUAc -3'
miRNA:   3'- aUGCuUGA---GUGGCGGa-CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 30192 0.73 0.150931
Target:  5'- gUugGAGCccggggcgCGCCGaUCUGCGCGCCGUu -3'
miRNA:   3'- -AugCUUGa-------GUGGC-GGACGCGCGGCAu -5'
24245 5' -58.8 NC_005263.2 + 29347 0.73 0.15946
Target:  5'- cGCGAGCaccgCGCCGCCUacgauCGCGCCGa- -3'
miRNA:   3'- aUGCUUGa---GUGGCGGAc----GCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 29221 0.66 0.467045
Target:  5'- cGCGuAUUUGCCGUCggcgcgcagcgGCGCGCCGa- -3'
miRNA:   3'- aUGCuUGAGUGGCGGa----------CGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 28708 0.69 0.299758
Target:  5'- cGCGcGCgUUGCCGUaCUGCGCGCCGc- -3'
miRNA:   3'- aUGCuUG-AGUGGCG-GACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 28356 0.73 0.163885
Target:  5'- cACGAGC--GCCGCCaGCGCGCCa-- -3'
miRNA:   3'- aUGCUUGagUGGCGGaCGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 27656 0.66 0.436476
Target:  5'- gACGAACgucucggCggcggcaagcacgGCCGCCuucuugUGCGCGCCGg- -3'
miRNA:   3'- aUGCUUGa------G-------------UGGCGG------ACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 26970 0.66 0.467045
Target:  5'- -uCGGACU-GCaGuCCUGCGCGCCGa- -3'
miRNA:   3'- auGCUUGAgUGgC-GGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 25718 0.67 0.418319
Target:  5'- gGCGc-CUCuuuCCugGCgCUGCGCGCCGUGc -3'
miRNA:   3'- aUGCuuGAGu--GG--CG-GACGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 25612 0.68 0.364123
Target:  5'- -cCGAAC-CGCCGCCgGC-CGCCGc- -3'
miRNA:   3'- auGCUUGaGUGGCGGaCGcGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 23918 0.69 0.284388
Target:  5'- cGCGAGCgugaccgUCGCUuuggcgGCUUGCGCGUCGUGa -3'
miRNA:   3'- aUGCUUG-------AGUGG------CGGACGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 23558 0.69 0.307299
Target:  5'- gGCGcAGC-CGCCGCCgccCGCGCCGc- -3'
miRNA:   3'- aUGC-UUGaGUGGCGGac-GCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 23509 0.71 0.226132
Target:  5'- cUGCGccGC-CACCGCCUGCGC-CCGa- -3'
miRNA:   3'- -AUGCu-UGaGUGGCGGACGCGcGGCau -5'
24245 5' -58.8 NC_005263.2 + 23159 0.71 0.203417
Target:  5'- cUGCGAACcgcgCACCGCCgUGC-CGCCGc- -3'
miRNA:   3'- -AUGCUUGa---GUGGCGG-ACGcGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 22677 0.69 0.307299
Target:  5'- gACGAACcccgCACCGCa--CGCGCCGa- -3'
miRNA:   3'- aUGCUUGa---GUGGCGgacGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 22403 0.77 0.085986
Target:  5'- cGCGAACguacgCGCCGCCgUGCuCGCCGUGu -3'
miRNA:   3'- aUGCUUGa----GUGGCGG-ACGcGCGGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.