miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 5' -58.8 NC_005263.2 + 21899 0.68 0.33079
Target:  5'- cGCGAACg-GCCGCCgcaucGCGCgGCCGc- -3'
miRNA:   3'- aUGCUUGagUGGCGGa----CGCG-CGGCau -5'
24245 5' -58.8 NC_005263.2 + 21580 0.72 0.173068
Target:  5'- cGCGuGCUCGCCGCCgGCGUcgacGCCGc- -3'
miRNA:   3'- aUGCuUGAGUGGCGGaCGCG----CGGCau -5'
24245 5' -58.8 NC_005263.2 + 20968 0.7 0.263522
Target:  5'- -uCGGACaUCGCCgacgcggcugcgcGCCUGCGCGUCGa- -3'
miRNA:   3'- auGCUUG-AGUGG-------------CGGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 19858 0.66 0.467045
Target:  5'- aUGCGAACaaggUCACgGCgaGCGCGgCGa- -3'
miRNA:   3'- -AUGCUUG----AGUGgCGgaCGCGCgGCau -5'
24245 5' -58.8 NC_005263.2 + 19127 0.68 0.322026
Target:  5'- -cCGAGCgCAUCGCCgggcgcuUGCGCGUCGUc -3'
miRNA:   3'- auGCUUGaGUGGCGG-------ACGCGCGGCAu -5'
24245 5' -58.8 NC_005263.2 + 19060 0.67 0.390608
Target:  5'- gACGcGCcgCGCgGCCUGCGCGCg--- -3'
miRNA:   3'- aUGCuUGa-GUGgCGGACGCGCGgcau -5'
24245 5' -58.8 NC_005263.2 + 18868 0.68 0.355576
Target:  5'- cGCGugcCUCGgCGCgccgCUGCGCGCCGa- -3'
miRNA:   3'- aUGCuu-GAGUgGCG----GACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 18579 0.67 0.418319
Target:  5'- gGCGucccGGC-CACUGCUgGCGCGCCGa- -3'
miRNA:   3'- aUGC----UUGaGUGGCGGaCGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 17885 0.67 0.390608
Target:  5'- cGCGAACgaucagUCgACCGgCgGCGCGCCGa- -3'
miRNA:   3'- aUGCUUG------AG-UGGCgGaCGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 15768 0.68 0.355576
Target:  5'- gGCGAGCUCcuucaGCUGCucgacgaccaCUGCGCGCUGc- -3'
miRNA:   3'- aUGCUUGAG-----UGGCG----------GACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 14998 0.66 0.447193
Target:  5'- gACGuucuGCUCGCCGgCUaucGC-CGCCGUGu -3'
miRNA:   3'- aUGCu---UGAGUGGCgGA---CGcGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 11889 0.71 0.232137
Target:  5'- gACGAcGCggCGCCgggcGCCUGCGCGCUGg- -3'
miRNA:   3'- aUGCU-UGa-GUGG----CGGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 11385 0.74 0.138915
Target:  5'- cACuu-CUCGCgGCCUGCGCGCaCGUGg -3'
miRNA:   3'- aUGcuuGAGUGgCGGACGCGCG-GCAU- -5'
24245 5' -58.8 NC_005263.2 + 10872 0.66 0.437444
Target:  5'- gGCgGAACUCggcACCGgC-GCGCGUCGUGa -3'
miRNA:   3'- aUG-CUUGAG---UGGCgGaCGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 10550 0.69 0.299758
Target:  5'- cGCGggUugUCgGCCGUCUGCGCGaCGUGc -3'
miRNA:   3'- aUGCuuG--AG-UGGCGGACGCGCgGCAU- -5'
24245 5' -58.8 NC_005263.2 + 9980 0.66 0.457061
Target:  5'- gUGCGcACgccguccgguUCGCCGuCUUGCGCGCCa-- -3'
miRNA:   3'- -AUGCuUG----------AGUGGC-GGACGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 9329 0.67 0.399711
Target:  5'- gGCGAAgUCGCCGgCaaUGCcuuGCGCCGg- -3'
miRNA:   3'- aUGCUUgAGUGGCgG--ACG---CGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 7448 0.67 0.422103
Target:  5'- cACGAaugccaaggcuuccuGCUgcaCGCCGCUUGCGCGCUu-- -3'
miRNA:   3'- aUGCU---------------UGA---GUGGCGGACGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 6545 0.75 0.107955
Target:  5'- cGCGAAagcucgcaUCGCCGCCacgGCGCGCCGc- -3'
miRNA:   3'- aUGCUUg-------AGUGGCGGa--CGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 6238 0.66 0.427818
Target:  5'- -cCGAucGCUCGCgGCCagGCGCgGUCGUGc -3'
miRNA:   3'- auGCU--UGAGUGgCGGa-CGCG-CGGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.