miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 5' -58.8 NC_005263.2 + 6043 1.05 0.000624
Target:  5'- gUACGAACUCACCGCCUGCGCGCCGUAg -3'
miRNA:   3'- -AUGCUUGAGUGGCGGACGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 23558 0.69 0.307299
Target:  5'- gGCGcAGC-CGCCGCCgccCGCGCCGc- -3'
miRNA:   3'- aUGC-UUGaGUGGCGGac-GCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 42230 0.68 0.33079
Target:  5'- gACGGACUUcggcccguACCGCCUGCG-GCuCGa- -3'
miRNA:   3'- aUGCUUGAG--------UGGCGGACGCgCG-GCau -5'
24245 5' -58.8 NC_005263.2 + 19858 0.66 0.467045
Target:  5'- aUGCGAACaaggUCACgGCgaGCGCGgCGa- -3'
miRNA:   3'- -AUGCUUG----AGUGgCGgaCGCGCgGCau -5'
24245 5' -58.8 NC_005263.2 + 29347 0.73 0.15946
Target:  5'- cGCGAGCaccgCGCCGCCUacgauCGCGCCGa- -3'
miRNA:   3'- aUGCUUGa---GUGGCGGAc----GCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 184 0.72 0.198056
Target:  5'- gGCGAGCcCGCUGCCcGUGCGCCc-- -3'
miRNA:   3'- aUGCUUGaGUGGCGGaCGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 700 0.71 0.208903
Target:  5'- cGCGAucguGC-CGCCGCCcGCgaGCGCCGUGg -3'
miRNA:   3'- aUGCU----UGaGUGGCGGaCG--CGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 23509 0.71 0.226132
Target:  5'- cUGCGccGC-CACCGCCUGCGC-CCGa- -3'
miRNA:   3'- -AUGCu-UGaGUGGCGGACGCGcGGCau -5'
24245 5' -58.8 NC_005263.2 + 31529 0.7 0.262176
Target:  5'- gGCGAACgcgUCGCCGCCggccuuggcgucgcUgcccaggcgGCGCGCCGUGc -3'
miRNA:   3'- aUGCUUG---AGUGGCGG--------------A---------CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 22677 0.69 0.307299
Target:  5'- gACGAACcccgCACCGCa--CGCGCCGa- -3'
miRNA:   3'- aUGCUUGa---GUGGCGgacGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 23918 0.69 0.284388
Target:  5'- cGCGAGCgugaccgUCGCUuuggcgGCUUGCGCGUCGUGa -3'
miRNA:   3'- aUGCUUG-------AGUGG------CGGACGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 2276 0.71 0.232137
Target:  5'- aGCGcgUUCGCCGUCggcaggucGUGCGCCGUGg -3'
miRNA:   3'- aUGCuuGAGUGGCGGa-------CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 6545 0.75 0.107955
Target:  5'- cGCGAAagcucgcaUCGCCGCCacgGCGCGCCGc- -3'
miRNA:   3'- aUGCUUg-------AGUGGCGGa--CGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 10550 0.69 0.299758
Target:  5'- cGCGggUugUCgGCCGUCUGCGCGaCGUGc -3'
miRNA:   3'- aUGCuuG--AG-UGGCGGACGCGCgGCAU- -5'
24245 5' -58.8 NC_005263.2 + 11385 0.74 0.138915
Target:  5'- cACuu-CUCGCgGCCUGCGCGCaCGUGg -3'
miRNA:   3'- aUGcuuGAGUGgCGGACGCGCG-GCAU- -5'
24245 5' -58.8 NC_005263.2 + 11889 0.71 0.232137
Target:  5'- gACGAcGCggCGCCgggcGCCUGCGCGCUGg- -3'
miRNA:   3'- aUGCU-UGa-GUGG----CGGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 28708 0.69 0.299758
Target:  5'- cGCGcGCgUUGCCGUaCUGCGCGCCGc- -3'
miRNA:   3'- aUGCuUG-AGUGGCG-GACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 19127 0.68 0.322026
Target:  5'- -cCGAGCgCAUCGCCgggcgcuUGCGCGUCGUc -3'
miRNA:   3'- auGCUUGaGUGGCGG-------ACGCGCGGCAu -5'
24245 5' -58.8 NC_005263.2 + 3600 0.74 0.138915
Target:  5'- aGCGAuuguAUUCGCCcaaucgggcGCCUGCGgGCCGUAg -3'
miRNA:   3'- aUGCU----UGAGUGG---------CGGACGCgCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 23159 0.71 0.203417
Target:  5'- cUGCGAACcgcgCACCGCCgUGC-CGCCGc- -3'
miRNA:   3'- -AUGCUUGa---GUGGCGG-ACGcGCGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.