miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 5' -58.8 NC_005263.2 + 10872 0.66 0.437444
Target:  5'- gGCgGAACUCggcACCGgC-GCGCGUCGUGa -3'
miRNA:   3'- aUG-CUUGAG---UGGCgGaCGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 34539 0.66 0.437444
Target:  5'- cAUGGACaCGCCGCUcgUGcCGCGcCCGUAc -3'
miRNA:   3'- aUGCUUGaGUGGCGG--AC-GCGC-GGCAU- -5'
24245 5' -58.8 NC_005263.2 + 14998 0.66 0.447193
Target:  5'- gACGuucuGCUCGCCGgCUaucGC-CGCCGUGu -3'
miRNA:   3'- aUGCu---UGAGUGGCgGA---CGcGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 41482 0.7 0.271025
Target:  5'- cGCGAcuGCUCGaccgCGCCgaGCGCGCCGc- -3'
miRNA:   3'- aUGCU--UGAGUg---GCGGa-CGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 47935 0.66 0.457061
Target:  5'- aGCGGGCUCGCC-CCggGCGCGgaucgCGUGc -3'
miRNA:   3'- aUGCUUGAGUGGcGGa-CGCGCg----GCAU- -5'
24245 5' -58.8 NC_005263.2 + 32420 0.69 0.307299
Target:  5'- cUGCGAGCUCGCCgGCCgcucuugGCaCGCCa-- -3'
miRNA:   3'- -AUGCUUGAGUGG-CGGa------CGcGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 31297 0.67 0.399711
Target:  5'- --aGAACUCgcccACCGUgUGCGCGCaUGUGc -3'
miRNA:   3'- augCUUGAG----UGGCGgACGCGCG-GCAU- -5'
24245 5' -58.8 NC_005263.2 + 17885 0.67 0.390608
Target:  5'- cGCGAACgaucagUCgACCGgCgGCGCGCCGa- -3'
miRNA:   3'- aUGCUUG------AG-UGGCgGaCGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 41523 0.68 0.354729
Target:  5'- cGCGucGACUacUugCGCCUgcgcaaacgcgcgGCGCGCCGUGg -3'
miRNA:   3'- aUGC--UUGA--GugGCGGA-------------CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 38542 0.72 0.182708
Target:  5'- aGCGAGCgCGCCGCCUGgcaagccgcgaGCGCCGc- -3'
miRNA:   3'- aUGCUUGaGUGGCGGACg----------CGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 21580 0.72 0.173068
Target:  5'- cGCGuGCUCGCCGCCgGCGUcgacGCCGc- -3'
miRNA:   3'- aUGCuUGAGUGGCGGaCGCG----CGGCau -5'
24245 5' -58.8 NC_005263.2 + 28356 0.73 0.163885
Target:  5'- cACGAGC--GCCGCCaGCGCGCCa-- -3'
miRNA:   3'- aUGCUUGagUGGCGGaCGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 30192 0.73 0.150931
Target:  5'- gUugGAGCccggggcgCGCCGaUCUGCGCGCCGUu -3'
miRNA:   3'- -AugCUUGa-------GUGGC-GGACGCGCGGCAu -5'
24245 5' -58.8 NC_005263.2 + 22403 0.77 0.085986
Target:  5'- cGCGAACguacgCGCCGCCgUGCuCGCCGUGu -3'
miRNA:   3'- aUGCUUGa----GUGGCGG-ACGcGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 18868 0.68 0.355576
Target:  5'- cGCGugcCUCGgCGCgccgCUGCGCGCCGa- -3'
miRNA:   3'- aUGCuu-GAGUgGCG----GACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 35435 0.68 0.355576
Target:  5'- cGCGAACgacgACC-CCgGCGCGCCGg- -3'
miRNA:   3'- aUGCUUGag--UGGcGGaCGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 35961 0.68 0.34717
Target:  5'- cUGCGugcaaggcGCUCgACCGCCUGgaGCGCgCGUAa -3'
miRNA:   3'- -AUGCu-------UGAG-UGGCGGACg-CGCG-GCAU- -5'
24245 5' -58.8 NC_005263.2 + 35552 0.68 0.338908
Target:  5'- gGCGGGCgcuacggCGCCGCCgGC-CGCCGc- -3'
miRNA:   3'- aUGCUUGa------GUGGCGGaCGcGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 30571 0.68 0.322815
Target:  5'- aACG-ACUucaCGCCGCUgcGCGCGCUGUAc -3'
miRNA:   3'- aUGCuUGA---GUGGCGGa-CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 19060 0.67 0.390608
Target:  5'- gACGcGCcgCGCgGCCUGCGCGCg--- -3'
miRNA:   3'- aUGCuUGa-GUGgCGGACGCGCGgcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.