miRNA display CGI


Results 61 - 73 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24245 5' -58.8 NC_005263.2 + 3322 0.7 0.238276
Target:  5'- cGCGGugUUcaaCGUCUGCGCGCCGc- -3'
miRNA:   3'- aUGCUugAGug-GCGGACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 32691 0.7 0.238276
Target:  5'- gUACGGccgGCUCACCgGCUUGCugccCGCCGUGc -3'
miRNA:   3'- -AUGCU---UGAGUGG-CGGACGc---GCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 3106 0.7 0.238276
Target:  5'- cGCGAGC-CACggCGCCaUGCGCGCCu-- -3'
miRNA:   3'- aUGCUUGaGUG--GCGG-ACGCGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 36582 0.7 0.238276
Target:  5'- gACGAACcgCGCCGCCUucaucGCGCGCg--- -3'
miRNA:   3'- aUGCUUGa-GUGGCGGA-----CGCGCGgcau -5'
24245 5' -58.8 NC_005263.2 + 41572 0.7 0.24455
Target:  5'- aUGCGAGCuuUCGCgCGUaUGCGCGCCGc- -3'
miRNA:   3'- -AUGCUUG--AGUG-GCGgACGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 32420 0.69 0.307299
Target:  5'- cUGCGAGCUCGCCgGCCgcucuugGCaCGCCa-- -3'
miRNA:   3'- -AUGCUUGAGUGG-CGGa------CGcGCGGcau -5'
24245 5' -58.8 NC_005263.2 + 45407 0.68 0.322026
Target:  5'- gACGAACUCggucugucggccGCCGCCgGCGCgacacugcaggcuGCCGg- -3'
miRNA:   3'- aUGCUUGAG------------UGGCGGaCGCG-------------CGGCau -5'
24245 5' -58.8 NC_005263.2 + 30571 0.68 0.322815
Target:  5'- aACG-ACUucaCGCCGCUgcGCGCGCUGUAc -3'
miRNA:   3'- aUGCuUGA---GUGGCGGa-CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 35552 0.68 0.338908
Target:  5'- gGCGGGCgcuacggCGCCGCCgGC-CGCCGc- -3'
miRNA:   3'- aUGCUUGa------GUGGCGGaCGcGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 35961 0.68 0.34717
Target:  5'- cUGCGugcaaggcGCUCgACCGCCUGgaGCGCgCGUAa -3'
miRNA:   3'- -AUGCu-------UGAG-UGGCGGACg-CGCG-GCAU- -5'
24245 5' -58.8 NC_005263.2 + 39251 0.68 0.34717
Target:  5'- aGCgGGGCUCG-CGCCccGCGCGCCGc- -3'
miRNA:   3'- aUG-CUUGAGUgGCGGa-CGCGCGGCau -5'
24245 5' -58.8 NC_005263.2 + 41523 0.68 0.354729
Target:  5'- cGCGucGACUacUugCGCCUgcgcaaacgcgcgGCGCGCCGUGg -3'
miRNA:   3'- aUGC--UUGA--GugGCGGA-------------CGCGCGGCAU- -5'
24245 5' -58.8 NC_005263.2 + 26970 0.66 0.467045
Target:  5'- -uCGGACU-GCaGuCCUGCGCGCCGa- -3'
miRNA:   3'- auGCUUGAgUGgC-GGACGCGCGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.