miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24246 5' -55.9 NC_005263.2 + 38418 0.66 0.649695
Target:  5'- gCGCGUCgGGUgcGCcGGCGUgacGCCGGc -3'
miRNA:   3'- -GCGCGGgCCAaaCGuUUGCA---CGGCUa -5'
24246 5' -55.9 NC_005263.2 + 5912 0.66 0.638555
Target:  5'- aGCGCCCGGc--GCG-GCGUGCguaCGGa -3'
miRNA:   3'- gCGCGGGCCaaaCGUuUGCACG---GCUa -5'
24246 5' -55.9 NC_005263.2 + 1877 0.66 0.627409
Target:  5'- gCGCGCCUGGcccggauugGCGGGguUGCCGAUc -3'
miRNA:   3'- -GCGCGGGCCaaa------CGUUUgcACGGCUA- -5'
24246 5' -55.9 NC_005263.2 + 33496 0.66 0.627409
Target:  5'- uCGCGCCC---UUGCAGAUGgaaGUCGGUg -3'
miRNA:   3'- -GCGCGGGccaAACGUUUGCa--CGGCUA- -5'
24246 5' -55.9 NC_005263.2 + 35534 0.66 0.616268
Target:  5'- uGCGCCCGGcg-GCGcGCGgGCgGGc -3'
miRNA:   3'- gCGCGGGCCaaaCGUuUGCaCGgCUa -5'
24246 5' -55.9 NC_005263.2 + 9472 0.66 0.616268
Target:  5'- gCGCGCCCGGc-UGCAGcugacgcuucACGaUGCCc-- -3'
miRNA:   3'- -GCGCGGGCCaaACGUU----------UGC-ACGGcua -5'
24246 5' -55.9 NC_005263.2 + 29914 0.66 0.616268
Target:  5'- gCGUGCCCGaa-UGCGGACGUagcgcGCCGc- -3'
miRNA:   3'- -GCGCGGGCcaaACGUUUGCA-----CGGCua -5'
24246 5' -55.9 NC_005263.2 + 18951 0.66 0.60514
Target:  5'- aGCGCgCCGGUU--CGAGCGcaGCCGGc -3'
miRNA:   3'- gCGCG-GGCCAAacGUUUGCa-CGGCUa -5'
24246 5' -55.9 NC_005263.2 + 25782 0.66 0.60514
Target:  5'- aGCaGCCCGcgc-GCuGAGCGUGCCGGc -3'
miRNA:   3'- gCG-CGGGCcaaaCG-UUUGCACGGCUa -5'
24246 5' -55.9 NC_005263.2 + 19077 0.66 0.60514
Target:  5'- gCGCGCgCUGGUgcgucUUGCAGGgcUG-GCCGAUg -3'
miRNA:   3'- -GCGCG-GGCCA-----AACGUUU--GCaCGGCUA- -5'
24246 5' -55.9 NC_005263.2 + 24007 0.66 0.594036
Target:  5'- gGCGCCgCGc--UGCAAA-GUGCCGAc -3'
miRNA:   3'- gCGCGG-GCcaaACGUUUgCACGGCUa -5'
24246 5' -55.9 NC_005263.2 + 45784 0.66 0.589604
Target:  5'- gGUGCUCGcGUUccgccaguucaacGCGGGCGUGCCGGc -3'
miRNA:   3'- gCGCGGGC-CAAa------------CGUUUGCACGGCUa -5'
24246 5' -55.9 NC_005263.2 + 15674 0.67 0.582966
Target:  5'- uGCGCuuGGcgUGCcaaGAGCG-GCCGGc -3'
miRNA:   3'- gCGCGggCCaaACG---UUUGCaCGGCUa -5'
24246 5' -55.9 NC_005263.2 + 9051 0.67 0.571937
Target:  5'- aCGaCGUCCGcGUUcGCGAAgaagucgccCGUGCCGAa -3'
miRNA:   3'- -GC-GCGGGC-CAAaCGUUU---------GCACGGCUa -5'
24246 5' -55.9 NC_005263.2 + 46187 0.67 0.571937
Target:  5'- gCGCGCUCG---UGCAGACGcgcgGCUGGUa -3'
miRNA:   3'- -GCGCGGGCcaaACGUUUGCa---CGGCUA- -5'
24246 5' -55.9 NC_005263.2 + 24688 0.67 0.560959
Target:  5'- gGCG-CCGGUaacgGCGgcgcgccgAACGUGCCGGg -3'
miRNA:   3'- gCGCgGGCCAaa--CGU--------UUGCACGGCUa -5'
24246 5' -55.9 NC_005263.2 + 27008 0.67 0.550039
Target:  5'- gGCGUCaUGGUcaguugUGC-GGCGUGCCGAc -3'
miRNA:   3'- gCGCGG-GCCAa-----ACGuUUGCACGGCUa -5'
24246 5' -55.9 NC_005263.2 + 18579 0.67 0.550039
Target:  5'- gGCGuCCCGGccacUGCuGGCGcGCCGAc -3'
miRNA:   3'- gCGC-GGGCCaa--ACGuUUGCaCGGCUa -5'
24246 5' -55.9 NC_005263.2 + 13059 0.67 0.539186
Target:  5'- uGUGCUCGGUUUcaCGGGCGUgucuGCCGGUg -3'
miRNA:   3'- gCGCGGGCCAAAc-GUUUGCA----CGGCUA- -5'
24246 5' -55.9 NC_005263.2 + 37934 0.67 0.539186
Target:  5'- gCGCGCcgccggcagCCGGUgcGCAAcCG-GCCGAUg -3'
miRNA:   3'- -GCGCG---------GGCCAaaCGUUuGCaCGGCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.