miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24251 3' -56 NC_005263.2 + 34596 0.66 0.644334
Target:  5'- uCUGCGuGUCGuuGaGCCGUAUUGGg-- -3'
miRNA:   3'- -GACGC-CGGCugUcCGGCAUAACCaag -5'
24251 3' -56 NC_005263.2 + 14140 0.66 0.644334
Target:  5'- -aGCGGCCaGCGcGGCCGccUUGGcgacUUCg -3'
miRNA:   3'- gaCGCCGGcUGU-CCGGCauAACC----AAG- -5'
24251 3' -56 NC_005263.2 + 22365 0.66 0.644334
Target:  5'- -cGCgGGCgGACAGGUCGUGcacGGcgCg -3'
miRNA:   3'- gaCG-CCGgCUGUCCGGCAUaa-CCaaG- -5'
24251 3' -56 NC_005263.2 + 6073 0.66 0.622092
Target:  5'- -cGCGcGCCGACAGGaaGccUUGGcgCg -3'
miRNA:   3'- gaCGC-CGGCUGUCCggCauAACCaaG- -5'
24251 3' -56 NC_005263.2 + 27028 0.66 0.61098
Target:  5'- -gGCGuGCCGACcuGGCCGccuugUGGaUCg -3'
miRNA:   3'- gaCGC-CGGCUGu-CCGGCaua--ACCaAG- -5'
24251 3' -56 NC_005263.2 + 3962 0.66 0.588821
Target:  5'- -aGCGaGCCuGGCAGGCCGUuguaacgGGcgCc -3'
miRNA:   3'- gaCGC-CGG-CUGUCCGGCAuaa----CCaaG- -5'
24251 3' -56 NC_005263.2 + 4214 0.66 0.588821
Target:  5'- -cGCGcGUCGACGGGUCGUcgaGGUa- -3'
miRNA:   3'- gaCGC-CGGCUGUCCGGCAuaaCCAag -5'
24251 3' -56 NC_005263.2 + 19313 0.66 0.588821
Target:  5'- -cGCGGCCcGCcGGCUGUGcggUGGUc- -3'
miRNA:   3'- gaCGCCGGcUGuCCGGCAUa--ACCAag -5'
24251 3' -56 NC_005263.2 + 17399 0.67 0.577792
Target:  5'- -cGCGGCCGcgcgccugGCGGGCgGUGUcgcaGGUg- -3'
miRNA:   3'- gaCGCCGGC--------UGUCCGgCAUAa---CCAag -5'
24251 3' -56 NC_005263.2 + 27543 0.68 0.523498
Target:  5'- --aCGGCCGGCAGGCCGg-------- -3'
miRNA:   3'- gacGCCGGCUGUCCGGCauaaccaag -5'
24251 3' -56 NC_005263.2 + 2701 0.68 0.523498
Target:  5'- -gGCGGCCGACAGaCCGa----GUUCg -3'
miRNA:   3'- gaCGCCGGCUGUCcGGCauaacCAAG- -5'
24251 3' -56 NC_005263.2 + 3921 0.68 0.502315
Target:  5'- -gGCGGCaauggCGGCAGGCCGaccggcagGUUGGcgCc -3'
miRNA:   3'- gaCGCCG-----GCUGUCCGGCa-------UAACCaaG- -5'
24251 3' -56 NC_005263.2 + 24943 0.68 0.491864
Target:  5'- -gGCGGCgGAC-GGCgGUGcgcGGUUCg -3'
miRNA:   3'- gaCGCCGgCUGuCCGgCAUaa-CCAAG- -5'
24251 3' -56 NC_005263.2 + 39297 0.69 0.455118
Target:  5'- -aGCGGCCGGCAGGCgcaugcgcgcgcgauCGcagGUUGGc-- -3'
miRNA:   3'- gaCGCCGGCUGUCCG---------------GCa--UAACCaag -5'
24251 3' -56 NC_005263.2 + 5045 0.69 0.431462
Target:  5'- -gGCGGCCGACuauuGGCCGacGUcGGcgUCg -3'
miRNA:   3'- gaCGCCGGCUGu---CCGGCa-UAaCCa-AG- -5'
24251 3' -56 NC_005263.2 + 22522 0.71 0.357268
Target:  5'- gCUGCGGCCugcucgaugccgaGACGGGCCGcaaagagGcGUUCa -3'
miRNA:   3'- -GACGCCGG-------------CUGUCCGGCauaa---C-CAAG- -5'
24251 3' -56 NC_005263.2 + 8201 0.72 0.293979
Target:  5'- uUGCGGCaCGuACGGcGCCGUcauggGGUUCg -3'
miRNA:   3'- gACGCCG-GC-UGUC-CGGCAuaa--CCAAG- -5'
24251 3' -56 NC_005263.2 + 12552 0.72 0.293979
Target:  5'- -gGCGGCCGGCGGcGCCGUAg------ -3'
miRNA:   3'- gaCGCCGGCUGUC-CGGCAUaaccaag -5'
24251 3' -56 NC_005263.2 + 33989 0.74 0.220903
Target:  5'- -aGCGGCgaGGCcGGCCGUGUUGGcugcgUCg -3'
miRNA:   3'- gaCGCCGg-CUGuCCGGCAUAACCa----AG- -5'
24251 3' -56 NC_005263.2 + 8070 1.1 0.000556
Target:  5'- gCUGCGGCCGACAGGCCGUAUUGGUUCg -3'
miRNA:   3'- -GACGCCGGCUGUCCGGCAUAACCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.