miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24251 5' -58.5 NC_005263.2 + 8713 0.66 0.530663
Target:  5'- aCAGGUCGGccgcgucCAUCGCguacUCGGCGaGCGg -3'
miRNA:   3'- -GUCUAGCCu------GUAGCGgc--AGCCGC-CGU- -5'
24251 5' -58.5 NC_005263.2 + 5590 0.66 0.509904
Target:  5'- gCGGccGUCGGGCAUCcgcacggcgagGCCGU--GCGGCAg -3'
miRNA:   3'- -GUC--UAGCCUGUAG-----------CGGCAgcCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 27870 0.66 0.509904
Target:  5'- aCGGAaucagUGGAUAagGCCGgCGGCGcGCAg -3'
miRNA:   3'- -GUCUa----GCCUGUagCGGCaGCCGC-CGU- -5'
24251 5' -58.5 NC_005263.2 + 46536 0.66 0.509904
Target:  5'- gGGuAUCGacGGCA-CGCUGUCGGcCGGCu -3'
miRNA:   3'- gUC-UAGC--CUGUaGCGGCAGCC-GCCGu -5'
24251 5' -58.5 NC_005263.2 + 25344 0.66 0.499653
Target:  5'- ---cUCGGGCAggUCGCCaucgcguuccUCGGCGGCc -3'
miRNA:   3'- gucuAGCCUGU--AGCGGc---------AGCCGCCGu -5'
24251 5' -58.5 NC_005263.2 + 23911 0.66 0.489494
Target:  5'- cCAGGUCGcGcGCAUCGCU--UGGUGGCu -3'
miRNA:   3'- -GUCUAGC-C-UGUAGCGGcaGCCGCCGu -5'
24251 5' -58.5 NC_005263.2 + 17152 0.67 0.479432
Target:  5'- -cGGUC-GACGUCGCgGuguUCGGCuGGCAg -3'
miRNA:   3'- guCUAGcCUGUAGCGgC---AGCCG-CCGU- -5'
24251 5' -58.5 NC_005263.2 + 39112 0.67 0.463548
Target:  5'- --uGUgGGACGUgGUggccggccagaucaaCGUCGGCGGCAc -3'
miRNA:   3'- gucUAgCCUGUAgCG---------------GCAGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 45053 0.67 0.449879
Target:  5'- ----cCGGGCAUCGUCaaCGGCGGUc -3'
miRNA:   3'- gucuaGCCUGUAGCGGcaGCCGCCGu -5'
24251 5' -58.5 NC_005263.2 + 32662 0.67 0.449879
Target:  5'- ----cCGGAUggCGCgGgUCGGCGGCGa -3'
miRNA:   3'- gucuaGCCUGuaGCGgC-AGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 23295 0.67 0.440252
Target:  5'- -----gGGACAggCGCCGUuuuaCGGCGGCc -3'
miRNA:   3'- gucuagCCUGUa-GCGGCA----GCCGCCGu -5'
24251 5' -58.5 NC_005263.2 + 18748 0.67 0.440252
Target:  5'- cCAGAUCGG-CG-CGaUCGUaGGCGGCGc -3'
miRNA:   3'- -GUCUAGCCuGUaGC-GGCAgCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 26518 0.67 0.440252
Target:  5'- -uGcgCGcGGCGUCGaCGcCGGCGGCGa -3'
miRNA:   3'- guCuaGC-CUGUAGCgGCaGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 6786 0.68 0.421357
Target:  5'- --aAUCGGugA-CGCCGgcgGGCGGCGu -3'
miRNA:   3'- gucUAGCCugUaGCGGCag-CCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 3492 0.68 0.402959
Target:  5'- gCAGcgaGUCGGGCAagUUGUCG-CGcGCGGCAa -3'
miRNA:   3'- -GUC---UAGCCUGU--AGCGGCaGC-CGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 44051 0.68 0.393952
Target:  5'- uGGAUCuGGaACAcggUGCUG-CGGCGGCAg -3'
miRNA:   3'- gUCUAG-CC-UGUa--GCGGCaGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 19371 0.68 0.393952
Target:  5'- cCGGAU-GcGCAUUGCCGucagccUCGGCGGCGc -3'
miRNA:   3'- -GUCUAgCcUGUAGCGGC------AGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 15942 0.68 0.385078
Target:  5'- -cGAUCGGGCgcauGUCGCaCGacacgCGGCGGaCAa -3'
miRNA:   3'- guCUAGCCUG----UAGCG-GCa----GCCGCC-GU- -5'
24251 5' -58.5 NC_005263.2 + 40077 0.69 0.350101
Target:  5'- aCGGcgCGGACGccUCGCaagacaucaaaauCGaCGGCGGCAa -3'
miRNA:   3'- -GUCuaGCCUGU--AGCG-------------GCaGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 12653 0.69 0.334676
Target:  5'- --cGUC-GAUAUCGUCGUCGGcCGGCGc -3'
miRNA:   3'- gucUAGcCUGUAGCGGCAGCC-GCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.