miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24251 5' -58.5 NC_005263.2 + 8104 1.08 0.000539
Target:  5'- uCAGAUCGGACAUCGCCGUCGGCGGCAg -3'
miRNA:   3'- -GUCUAGCCUGUAGCGGCAGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 44107 0.81 0.056642
Target:  5'- gCAGAUCGGuCAggugCGCUGcUCGGCGGCGc -3'
miRNA:   3'- -GUCUAGCCuGUa---GCGGC-AGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 1624 0.79 0.077459
Target:  5'- cCGGGUCGaACG-CGUCGUCGGCGGCGu -3'
miRNA:   3'- -GUCUAGCcUGUaGCGGCAGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 32893 0.76 0.117874
Target:  5'- gAGuuUCGuGGCGUCGgCGUCGGCGGCc -3'
miRNA:   3'- gUCu-AGC-CUGUAGCgGCAGCCGCCGu -5'
24251 5' -58.5 NC_005263.2 + 20966 0.76 0.121175
Target:  5'- --uGUCGGACAUCGCCGacgCGGCuGCGc -3'
miRNA:   3'- gucUAGCCUGUAGCGGCa--GCCGcCGU- -5'
24251 5' -58.5 NC_005263.2 + 39064 0.75 0.139006
Target:  5'- -cGAacgCGGACGucguagccggcUCGCCGUCGcGCGGCAc -3'
miRNA:   3'- guCUa--GCCUGU-----------AGCGGCAGC-CGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 3386 0.75 0.139006
Target:  5'- -cGA-CGGGCGUCGCCGUCGuuGCgGGCAc -3'
miRNA:   3'- guCUaGCCUGUAGCGGCAGC--CG-CCGU- -5'
24251 5' -58.5 NC_005263.2 + 27796 0.75 0.139006
Target:  5'- -cGcgCGGuACAUCGCCGUCGugaucGCGGCGu -3'
miRNA:   3'- guCuaGCC-UGUAGCGGCAGC-----CGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 24680 0.74 0.159214
Target:  5'- -cGAUCGGGgG-CGCCGguaaCGGCGGCGc -3'
miRNA:   3'- guCUAGCCUgUaGCGGCa---GCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 29304 0.73 0.182037
Target:  5'- cCGGGUCGGcaugcGCAUCGCgCG-CGGCGaGCAc -3'
miRNA:   3'- -GUCUAGCC-----UGUAGCG-GCaGCCGC-CGU- -5'
24251 5' -58.5 NC_005263.2 + 29212 0.72 0.207708
Target:  5'- gCAGGcCGGcGCGUauuUGCCGUCGGCGcGCAg -3'
miRNA:   3'- -GUCUaGCC-UGUA---GCGGCAGCCGC-CGU- -5'
24251 5' -58.5 NC_005263.2 + 4676 0.72 0.213204
Target:  5'- gCGGGUCuuucgucaGGAUcgUGCCGUCGGCGaGCu -3'
miRNA:   3'- -GUCUAG--------CCUGuaGCGGCAGCCGC-CGu -5'
24251 5' -58.5 NC_005263.2 + 46152 0.72 0.22457
Target:  5'- gCAGAUCGacgcgguugccGGCGUCGCCGgugcCGGCGcGCu -3'
miRNA:   3'- -GUCUAGC-----------CUGUAGCGGCa---GCCGC-CGu -5'
24251 5' -58.5 NC_005263.2 + 16360 0.71 0.24258
Target:  5'- aAGcgCGcGGCcgCGUCGcUCGGCGGCGg -3'
miRNA:   3'- gUCuaGC-CUGuaGCGGC-AGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 24785 0.71 0.255244
Target:  5'- gCGGcGUCGG-CGgcUCGCCGggcgUCGGCGGCGc -3'
miRNA:   3'- -GUC-UAGCCuGU--AGCGGC----AGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 895 0.71 0.27525
Target:  5'- uCAGcgCGGcgGUCGCCGcCGGCGGg- -3'
miRNA:   3'- -GUCuaGCCugUAGCGGCaGCCGCCgu -5'
24251 5' -58.5 NC_005263.2 + 27784 0.7 0.29649
Target:  5'- -cGAcagCGGugAUCGUCGggaCGGCGGCc -3'
miRNA:   3'- guCUa--GCCugUAGCGGCa--GCCGCCGu -5'
24251 5' -58.5 NC_005263.2 + 18157 0.7 0.303848
Target:  5'- aCAGcuAUCGG-CggCGgCGUUGGCGGCAu -3'
miRNA:   3'- -GUC--UAGCCuGuaGCgGCAGCCGCCGU- -5'
24251 5' -58.5 NC_005263.2 + 17626 0.7 0.318212
Target:  5'- gCGGGUCGcGCAUCGaugcguuCCGUCGGCgcuacGGCAu -3'
miRNA:   3'- -GUCUAGCcUGUAGC-------GGCAGCCG-----CCGU- -5'
24251 5' -58.5 NC_005263.2 + 45132 0.7 0.314383
Target:  5'- cCAGGUCGGGaagGUCGCaGaccuggcucuuggcuUCGGCGGCGg -3'
miRNA:   3'- -GUCUAGCCUg--UAGCGgC---------------AGCCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.