Results 1 - 20 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 8104 | 1.08 | 0.000539 |
Target: 5'- uCAGAUCGGACAUCGCCGUCGGCGGCAg -3' miRNA: 3'- -GUCUAGCCUGUAGCGGCAGCCGCCGU- -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 44107 | 0.81 | 0.056642 |
Target: 5'- gCAGAUCGGuCAggugCGCUGcUCGGCGGCGc -3' miRNA: 3'- -GUCUAGCCuGUa---GCGGC-AGCCGCCGU- -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 1624 | 0.79 | 0.077459 |
Target: 5'- cCGGGUCGaACG-CGUCGUCGGCGGCGu -3' miRNA: 3'- -GUCUAGCcUGUaGCGGCAGCCGCCGU- -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 32893 | 0.76 | 0.117874 |
Target: 5'- gAGuuUCGuGGCGUCGgCGUCGGCGGCc -3' miRNA: 3'- gUCu-AGC-CUGUAGCgGCAGCCGCCGu -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 20966 | 0.76 | 0.121175 |
Target: 5'- --uGUCGGACAUCGCCGacgCGGCuGCGc -3' miRNA: 3'- gucUAGCCUGUAGCGGCa--GCCGcCGU- -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 39064 | 0.75 | 0.139006 |
Target: 5'- -cGAacgCGGACGucguagccggcUCGCCGUCGcGCGGCAc -3' miRNA: 3'- guCUa--GCCUGU-----------AGCGGCAGC-CGCCGU- -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 27796 | 0.75 | 0.139006 |
Target: 5'- -cGcgCGGuACAUCGCCGUCGugaucGCGGCGu -3' miRNA: 3'- guCuaGCC-UGUAGCGGCAGC-----CGCCGU- -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 3386 | 0.75 | 0.139006 |
Target: 5'- -cGA-CGGGCGUCGCCGUCGuuGCgGGCAc -3' miRNA: 3'- guCUaGCCUGUAGCGGCAGC--CG-CCGU- -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 24680 | 0.74 | 0.159214 |
Target: 5'- -cGAUCGGGgG-CGCCGguaaCGGCGGCGc -3' miRNA: 3'- guCUAGCCUgUaGCGGCa---GCCGCCGU- -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 29304 | 0.73 | 0.182037 |
Target: 5'- cCGGGUCGGcaugcGCAUCGCgCG-CGGCGaGCAc -3' miRNA: 3'- -GUCUAGCC-----UGUAGCG-GCaGCCGC-CGU- -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 29212 | 0.72 | 0.207708 |
Target: 5'- gCAGGcCGGcGCGUauuUGCCGUCGGCGcGCAg -3' miRNA: 3'- -GUCUaGCC-UGUA---GCGGCAGCCGC-CGU- -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 4676 | 0.72 | 0.213204 |
Target: 5'- gCGGGUCuuucgucaGGAUcgUGCCGUCGGCGaGCu -3' miRNA: 3'- -GUCUAG--------CCUGuaGCGGCAGCCGC-CGu -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 46152 | 0.72 | 0.22457 |
Target: 5'- gCAGAUCGacgcgguugccGGCGUCGCCGgugcCGGCGcGCu -3' miRNA: 3'- -GUCUAGC-----------CUGUAGCGGCa---GCCGC-CGu -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 16360 | 0.71 | 0.24258 |
Target: 5'- aAGcgCGcGGCcgCGUCGcUCGGCGGCGg -3' miRNA: 3'- gUCuaGC-CUGuaGCGGC-AGCCGCCGU- -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 24785 | 0.71 | 0.255244 |
Target: 5'- gCGGcGUCGG-CGgcUCGCCGggcgUCGGCGGCGc -3' miRNA: 3'- -GUC-UAGCCuGU--AGCGGC----AGCCGCCGU- -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 895 | 0.71 | 0.27525 |
Target: 5'- uCAGcgCGGcgGUCGCCGcCGGCGGg- -3' miRNA: 3'- -GUCuaGCCugUAGCGGCaGCCGCCgu -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 27784 | 0.7 | 0.29649 |
Target: 5'- -cGAcagCGGugAUCGUCGggaCGGCGGCc -3' miRNA: 3'- guCUa--GCCugUAGCGGCa--GCCGCCGu -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 18157 | 0.7 | 0.303848 |
Target: 5'- aCAGcuAUCGG-CggCGgCGUUGGCGGCAu -3' miRNA: 3'- -GUC--UAGCCuGuaGCgGCAGCCGCCGU- -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 45132 | 0.7 | 0.314383 |
Target: 5'- cCAGGUCGGGaagGUCGCaGaccuggcucuuggcuUCGGCGGCGg -3' miRNA: 3'- -GUCUAGCCUg--UAGCGgC---------------AGCCGCCGU- -5' |
|||||||
24251 | 5' | -58.5 | NC_005263.2 | + | 17626 | 0.7 | 0.318212 |
Target: 5'- gCGGGUCGcGCAUCGaugcguuCCGUCGGCgcuacGGCAu -3' miRNA: 3'- -GUCUAGCcUGUAGC-------GGCAGCCG-----CCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home